Salvelinus fontinalis (brook trout): 129814129
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Entry
129814129 CDS
T11136
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like isoform X1
KO
K14409
protein SMG7
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129814129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129814129
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129814129
mRNA cycle factors
Common to processing body (P body) and stress granule
129814129
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
129814129
NCBI-ProteinID:
XP_055722932
LinkDB
All DBs
Position
17:29921580..29949752
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AA seq
1185 aa
AA seq
DB search
MNLCGQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQTNPSTIVKPQPSSCSYICQHCLVHLGDVARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALTKAIESHDEVK
TKWSMSDFIKAFIKFHGHVYLSKSLEKLNNLREKLEEQFQRLIRQKAFSSQQLVHITIIN
LFELHHLRDFGNEADDQSFSSDEQIGWFQLLGLFMSFLGIMCSQGLLNKNRGEEIMGECP
LPAIKVSLDWLKLRSTVFQDSAVNKRQYVWPWLVSILNSFQPKEDDVSCASMTPLPEEFE
LQGFLALRPALRILDFSKGHQGVAVDKEGLPVRARHQRLISLGKWIAENQPGLIQYKFSD
SLLLFITDIEELAIEEPQEKDAPVLQETSNGEQTPNEGNMGLKSVLSMGKTQNSVLEIGE
RPVVTFKENIKPQEQSREPSSNQHHKDAGKERRDFGKGNGALGKGEQKRDGKRKSEVKKN
SHEKAADAGKQVKAQPEMRTPVSEARKTPVTQTQTTCSSQFIPIHHPGAFPPLPSRPGFP
SPAYVIPPPVAFSMNPGFTFSTGMSVSGPFLQPASHPQQPGSQQQVQVQAGKPSHIPYSQ
QRPAGPGAMNQGPPQGQQGPPQQQPSQAQQSMQQSVQLQALAKQQQQSPTKPVQPVQLGK
SPPHHPGMHQYMQVDQAGQMWGQHQGQPTMQKMQVPVKQPFYGMPPQDSLKLFEQHPVQT
AGQMPIQLQQQNSMDKKMKYPDVKMQDFYWELPYRVGDNRQMVGERMGKRPPPGVFHPDQ
DNAPRGPPFEDNKSSPLLPPDLLKSLSNFEEEELVFTKPHGFYQAMASPLSTAPGRNLFS
RMESGAEVMGQSSSLMPLSGFPIQESSYQNSIFSQAYGKNMSPNPKPDAPMLHQEPSLYS
LFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHGSIPFSNFGPIGTPDSRD
RRMVDRWKVEKTGAVSGFGLDYLPAVSSSTDHRAPENSWHQGNTPSSSWAAQESPMEDSS
TVLLDSLKSIWSSSMMQPGPSALEQLLMQQKQKQQRGHGTMNPPH
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcggccaatacttaaggcaggcagaggccctgaaggctgacatgacagat
tctaagcttggcgcagcagaggtctggacttcaaggcaggctcttcaggacttgtaccag
aagatgctggtgactgacctggagtatgctttggacaagaaagtggagcaagatctctgg
aaccatgcttttaagaatcaaataacaacactacagagtcaagccaagaacagagccaac
cccaatagaagtgaggtgcaggccaatctgtccttgtttctcgaggcagctagtggattt
tacacacaattactacaggagctgtgtaccgtgttcaacgtggatttgccgtgtcgtgtg
aaatcatctcagcttggaattatcagcaataaacagaccaaccccagcaccattgtaaaa
ccccaacctagctcttgctcttatatctgccagcattgccttgtccaccttggtgacgtt
gcacgatatcgcaaccaaaccagccaggcagagtcctattacagacatgcagctcaactt
gtcccctcaaatggtcagccttacaatcagctggccatcctggcctcctctaaaggggac
cacctcacaacgatattctactactgcaggagcatcgccgtcaagttccctttccctgca
gcctccaccaacctgcagaaagctctcactaaagctattgaaagccacgatgaggtcaaa
acaaagtggagtatgtcagatttcatcaaggccttcatcaagttccacggtcacgtttac
ctgagcaagagtttggagaagctcaacaacctgagggagaagctggaagagcagtttcag
aggctgattcgacagaaagccttcagctcccagcagctggtccacatcacgattatcaac
ctgtttgagctgcaccatctgagggactttggcaacgaagcagatgaccagagcttcagc
tccgacgagcaaatcggctggttccaacttctcggcctcttcatgtcatttctgggtatc
atgtgtagccaaggattactgaataagaaccgaggagaggagatcatgggagaatgtcca
ctgccggccatcaaggtgtctctggactggctcaaactgcgatccactgtttttcaggac
agtgctgtgaacaaacgacagtatgtttggccttggctggtgtccattctgaacagtttc
caaccgaaggaagatgatgtttcctgtgcatcaatgactccacttccagaggagtttgaa
cttcaggggtttctggctctccgaccagctctacggatccttgacttcagtaaaggccac
cagggtgttgctgtggacaaggagggtctgccagtccgtgcccgtcaccagaggctcatc
agtctggggaaatggattgcagaaaaccaaccagggctgattcagtacaaattcagcgac
agtctgctgttgttcatcactgacattgaggagttggccatcgaggagccccaggagaag
gatgcccctgtgctccaggagacctccaatggagagcagactcccaacgagggcaacatg
ggtctgaagtcagtcctatccatgggcaagacccagaacagtgtgttggagatcggcgag
agacctgtggtgactttcaaggaaaacatcaagccccaggagcaaagcagggagcccagc
agcaaccagcaccataaggatgcagggaaggaacggagggacttcggcaaaggtaacgga
gcgctgggaaaaggagagcagaagcgggatggcaagaggaagagtgaggtgaagaagaac
agccatgagaaggctgcagatgcagggaaacaggtgaaagcccagccggagatgaggaca
ccagtgtctgaggccaggaagactccagtcactcagacccagactacctgctcctcccag
ttcatccccatccaccacccgggagccttccctcccctgcccagccgaccaggtttccct
tctccggcttatgtgatccctcctcccgtggcgttctccatgaaccccggcttcaccttc
tctacaggcatgtctgtctccgggccattcctacagccggcctcccaccctcagcagcct
ggctcccagcagcaggtgcaggtccaggccgggaagccgtcgcacattccatacagccag
cagaggccagcagggccgggggccatgaaccaggggcccccccagggccagcagggtcct
ccccagcagcagccctcccaggcccagcagtccatgcagcagtcggtgcagcttcaggct
ctggccaaacagcagcagcagtcacccactaagcctgtgcagccagtacagctgggcaaa
agcccacctcaccatccagggatgcatcagtacatgcaggttgaccaggctggccagatg
tggggccagcaccaggggcagcccaccatgcagaagatgcaggtgcccgtcaagcagccc
ttctatggcatgcccccacaggactccctgaagctcttcgagcaacaccccgtgcaaacg
gctgggcagatgcccatacagctacagcagcagaacagcatggacaagaagatgaagtac
ccggatgtgaaaatgcaggatttttattgggagcttccctaccgcgtgggagataacaga
cagatggtgggggagaggatgggcaagcggccgcccccaggggtcttccacccagaccag
gacaacgcacccagaggacctccctttgaggacaacaagagctcccctcttctgcctcca
gaccttttaaaaagtctatcaaattttgaggaggaagagctggtctttactaagcctcat
ggtttctaccaggccatggcgagtcctcttagcactgctccaggaagaaacctattttcc
agaatggagagtggtgctgaggtgatgggccagtcgtcttctctcatgcccttatctggg
tttccaattcaggagagttcctatcaaaacagcattttcagccaggcgtatgggaaaaac
atgtctcccaaccccaagcctgatgctcccatgctgcaccaggaaccttctctgtactcc
ttgtttgaaggaactccatggtccccgtcccttcccgccagctcagaccactctacacca
gcaagccagtcccctcactcttccaacccaagcagtttaccctcttccccacccacacac
aaccacggctccatccccttctcgaacttcggccccataggaacgcccgacagccgagac
aggaggatggtcgaccgctggaaggtggaaaagactggtgctgtgagtgggtttggtttg
gactacctgcccgctgtgtcatcctctacagatcaccgagcccccgagaacagctggcac
cagggaaacacccccagcagctcctgggcggcccaggagtcgcccatggaagactcctcc
actgtgctccttgacagtctgaagtccatctggtccagctcaatgatgcagccggggccg
tcggctctggagcagctcctcatgcagcagaagcagaagcagcagaggggccacggcacc
atgaaccctccacactga
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