Salvelinus fontinalis (brook trout): 129814444
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Entry
129814444 CDS
T11136
Symbol
puf60a
Name
(RefSeq) poly(U)-binding-splicing factor PUF60a
KO
K12838
poly(U)-binding-splicing factor PUF60
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129814444 (puf60a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfon03041
]
129814444 (puf60a)
Spliceosome [BR:
sfon03041
]
Complex A
U2 snRNP components
U2 related factors
129814444 (puf60a)
Complex B
129814444 (puf60a)
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Motif
Pfam:
RRM_1
RRM_7
DUF1543
Motif
Other DBs
NCBI-GeneID:
129814444
NCBI-ProteinID:
XP_055723533
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Position
17:complement(43289548..43350261)
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AA seq
526 aa
AA seq
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MAVAVSAGGEALMMENGQSTASKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTLAH
QQQQLTNLQMASLTMGFGDPLSPLQSVAAQRQRALAIMCRVYVGSIYYELGEDTVRQAFA
PFGPIKSIDMSWDSVTMKHKGFAFVEYDVPEAAQLSLEQMNSVLLGGRNIKVGRPSNIGQ
AQPIIDQLAEEARAFNRIYVASVHPDLSDEDIKSVFEAFGRIKSCTLAREPTTGKHKSYG
FIEYDKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPTAPGGLPAAAAVAAAAAT
AKITAQETVGSSVLGALAGPALLSQQLGGLPQAVMAAQAPGIITGVTPVRPALPVLPQVG
LVNPVLALPPVLVTSLVAAQEAKKKEVEEEALQDGTGQEPLSEQEHMSISGSSARHMVMQ
KLLRKQESTVMVLRNMVGPEDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEDDAEVIV
KIFVEFSMAAEMNKAIQALNNRWFGGRKVIAEVYDQERFDNSDLSA
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggctgtttctgcgggaggcgaggctctgatgatggagaatggacagagcacc
gcctcaaagctcggcctgccgcctctcacccctgagcagcaggaggcactgcagaaggcg
aagaagtatgccatggagcagagcattaagagtgtgctggtcaaacagaccctggcccat
caacaacagcagctcaccaacttacagatggcatcgctgacaatgggctttggagatccc
ctctcacctttacaatcggtagcggctcagagacagcgagcattagccatcatgtgccga
gtgtacgtgggctccatttactacgagctgggagaggacacggtccggcaggcctttgcc
ccgttcggccccatcaagagcatcgacatgtcctgggactctgttacaatgaaacacaag
ggttttgcatttgtggagtatgatgtgcctgaggcagcccagctatcccttgagcagatg
aactccgttttgctgggagggagaaacattaaggtgggacgaccgagcaacatcggacag
gcccagccgatcattgaccagctggcagaagaggcacgcgccttcaaccgaatctacgtg
gcgtctgtgcaccccgacctctcggacgaggacatcaagagtgtgtttgaggcgttcggc
cggatcaagtcgtgcactctggcgagagaacccaccacggggaaacacaagagctacggc
tttattgagtacgacaaggctcagtcctcccaggatgcagtttcctccatgaatctcttt
gacctagggggtcaatacctgcgtgtgggcaaagcggtcaccccccccatgcccctgctc
actccgaccgcacctggcggactccccgctgcagcagctgtggcggctgcagctgccaca
gccaaaatcactgcccaggagacggttgggtcatcggtgctgggagcgctggctgggccc
gccctcctctctcaacagttgggtggcctgccccaagccgtcatggcagcccaggccccg
gggatcatcacaggggtaaccccagtgcggcccgctttgcctgtgctacctcaggtgggc
ctggtcaacccagtgctggccttaccaccggtgctggtcacctctctggtggcggcccag
gaggccaagaagaaggaagtggaggaggaggccttgcaggatgggacgggccaggagccg
ctgagtgagcaggagcacatgagcatctccgggagcagcgccagacacatggtcatgcag
aagttgctccgcaaacaagagtcgacggtgatggtgctgcgaaacatggtaggaccagag
gacatcgacgatgacctggagggtgaggtgactgaggagtgcggcaagtttggcgcggtc
aaccgtgtcatcatctaccaggaaaagcagggcgaggaggatgatgcggaggtaattgtc
aagatctttgtggagttctccatggcggcagagatgaacaaggccatccaggcactcaat
aatcgctggtttggaggtcgcaaggtcattgccgaggtgtacgaccaggagcgctttgac
aacagcgacttatctgcataa
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