KEGG   Salvelinus fontinalis (brook trout): 129814480
Entry
129814480         CDS       T11136                                 
Symbol
wdr33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
  KO
K15542  polyadenylation factor subunit 2
Organism
sfon  Salvelinus fontinalis (brook trout)
Pathway
sfon03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    129814480 (wdr33)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sfon03019]
    129814480 (wdr33)
Messenger RNA biogenesis [BR:sfon03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     129814480 (wdr33)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML WDR55 WD40_Gbeta Beta-prop_IFT140_1st EIF3I Beta-prop_Aladin Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_IFT122_1st eIF2A Beta-prop_Vps41 Beta-prop_SCAP WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_WDR11_2nd Beta-prop_WDR41 Ge1_WD40 PEP5_VPS11_N
Other DBs
NCBI-GeneID: 129814480
NCBI-ProteinID: XP_055723590
LinkDB
Position
17:46392164..46433546
AA seq 1155 aa
MATDTSSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRHLENRLWQRDHRDFRAIQPDAGCYNDLVPPVGILSNPMNAVTTKFVRTSTNKVKC
PVFVIRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWN
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDMEPNSLAAIPGMGIPDQLKAAMEQEASDKETAAEEEMSIPGLDWGIEE
ILQKDQKKVPQKKVPYAKPIPAQFQQAWADNKVPLVPPGGEKKERMDEKKMDGKTNTNPM
MLEQMKMDRMNQMDGNMPPPGGPQGPMPPFPGQGGTMPPPPQGFPQSMPPQQMPHNMGPP
MGPGVMQAPFMRPGQMGPPPGSQHHQGPPQGMMGPPDLHGPQGMQRHPGPHRNMGPQGPH
GMPPGPRGMQGPPGNMQGPPPGGMMGPPPRGQGPPPQGGMMPPQGNMMGPQGPMQGGVGM
GPPMQNPPRTHGNMPSMGGMHGMGNMQGPPPGGMHGPPPGNMQGPPGNMQGPSGNMQGPP
GNMQGPPGNMQGPPSYMQHQVGQNTGPMMHGMGQQGPNGKGDTRGPPNHHMGPPPGGQGQ
GGPGGPDQGSGSYWGDSQQGRRSNDFNEGGQDFHGRGEESWRRGSSQEYQGGHRGGGGGQ
GGGGGNGGNWGSSEERFPRDGGEFRGRRDDRFGGYVSPGEEFDQRQRDRLPPPRHGQDSD
DTYRGVGQGRPGGRGFPDEFGGPEENFDTSNEMAGGWDNGGRGRPPRGGGPPRGGGGGGG
GRQGLLPTPDEFPPHYEGGRSQEAWEGGQDQGHEAYREGQRSEHGPPHDSPSPASRERSS
SLQGMDMASLPPRKRPWHDGPGTGDQDSPGAGVEDRTTGRPPQREEGGYGPLTRGGRGGW
RGAPRGAPRGGGRGR
NT seq 3468 nt   +upstreamnt  +downstreamnt
atggcgacggacaccagctccccgccacggttcttccacatgccgcggttccagcaccag
gcaccacggcagctcttctacaagcgccccgacttcgcccagcagcaggccatgcagcag
ctcaccttcgacggcaagcgcatgcgtaaggctgtcaaccgcaagaccatcgactacaac
ccctcggtcattaggcacctggagaatcgtttgtggcagcgagaccacagagatttccgt
gctatccaaccagatgcaggatgctacaatgatctggttcctcctgtgggcatcttgagt
aaccccatgaatgcagttaccacaaagtttgtccgaacttccacgaacaaagtgaagtgc
cctgtctttgtcataaggtggactcctgaggggaggcgacttgtcacaggagcctccagt
ggagagttcaccttgtggaacggactcaccttcaactttgagaccatcttacaggcccat
gacagccccgtgcgggccatgacctggtctcacaacgacatgtggatgctgacggctgac
cacggcggctacgtcaagtactggcagtccaacatgaacaacgtcaagatgttccaggct
cacaaggaggcgattagagaggccagtttctcacctacggataataaatttgccacttgc
tctgatgacggaaccgtacgcatctgggactttctacgctgtcacgaggagagaattctc
agaggtcacggagctgacgtgaagtgcgtggactggcatcccactaaaggcctggtggtt
tctgggagcaaagatagccagcagccaataaaattctgggatcccaagaccggacagagt
ttggccacacttcacgcccataagaacacggtgatggaggtgaagtggaacctgaacggt
aactggctgctgacagcatcacgcgaccacctgtgtaaactctttgacatccgcaacctc
aaggaggagctgcaggtgttccgaggccacaagaaagaggccacagctgtagcgtggcac
cctgtccacgagggcctgttcgccagcggaggctcagacggatccctcctcttctggaac
gtaggtgtggagaaggaggtgggcggaatggagatggcccatgagggcatgatatggagc
ctggcgtggcatccgctcgggcacatcctctgctcgggatccaacgaccacaccagtaaa
ttctggacgaggaatcggccaggggacaagatgagggacagatacaatctgaatttgtta
cctgggatgtcagaggatggagtggaatacgatgacatggagccaaacagcttagctgcc
attcctggcatggggatccccgatcagctcaaagctgccatggaacaagaggcaagcgat
aaagagactgcagccgaggaggagatgagcatcccaggtctggattgggggattgaggag
attttacagaaagaccagaagaaagtgccacagaagaaggtcccctacgccaaacccatc
cctgcccaattccaacaggcctgggcggataataaggtgcctctcgtgccaccgggagga
gagaagaaagaaaggatggatgagaagaaaatggatgggaagaccaacaccaacccgatg
atgctagagcaaatgaagatggaccgtatgaatcagatggatgggaacatgcctcccccg
ggaggtccacaaggacccatgccacctttccctggtcagggaggaaccatgcccccacct
cctcagggcttcccccagtccatgccccctcagcagatgccccacaacatggggcccccc
atgggccctggcgtcatgcaggctccgttcatgcgtccgggccagatgggcccccctcca
gggtcccagcaccaccaggggcctcctcagggcatgatgggtccccctgacctccatggg
ccccaaggcatgcagaggcaccccggcccccacagaaacatgggcccccaggggcctcac
ggcatgcctcccggacccagagggatgcagggcccccccggaaacatgcagggcccccca
ccaggaggaatgatggggccccctcctcgaggccaggggcctccaccacaggggggcatg
atgccccctcaggggaatatgatgggcccacagggacccatgcagggcggggtggggatg
gggcctcccatgcagaaccctcccaggacacacggcaacatgccaagcatggggggcatg
catgggatgggcaacatgcaggggccacccccaggtgggatgcacgggcccccaccgggt
aacatgcaaggaccccccgggaacatgcagggcccctctggaaacatgcaaggaccccca
ggcaatatgcagggcccaccaggcaacatgcaggggcctccatcctacatgcagcaccag
gtgggacaaaacactggccccatgatgcatgggatgggacagcaaggacccaatggcaaa
ggagatacccgagggcctcctaaccaccacatgggtcctccacctgggggccaggggcag
ggcggccctgggggccctgaccagggctctggttcttactggggagactctcagcagggg
cgccgatccaacgacttcaatgaaggtggccaggacttccacggacggggggaggagagc
tggaggagagggtccagccaggaataccagggaggccacagaggaggagggggagggcaa
gggggaggaggggggaatgggggaaactggggctcttctgaggaaagattcccccgtgat
gggggagagttccgaggccgcagggacgacaggtttggtggttatgtgagtccaggagag
gagtttgaccagaggcagagagacagactgcctccaccaaggcatggccaggactcagac
gacacgtacagaggggttggacagggtcgccctggggggagggggttccctgatgagttt
ggtgggccggaagagaactttgacacctcaaatgagatggccggaggttgggacaacggt
gggagggggagacccccccgaggagggggcccacccagaggaggaggaggtggtggaggt
ggacggcagggcttgctccccacccctgatgagttccccccacactatgagggaggcaga
agtcaggaggcctgggagggcgggcaagatcaaggtcacgaggcttacagagaaggccag
cgctccgagcacggcccgccgcacgacagcccgtcccctgccagccgtgagcgctcctcc
tccctgcagggcatggacatggcctcgctgcccccacgcaaacgcccgtggcacgacggc
ccgggcaccggagaccaagactccccgggagcaggggtagaggacaggacaacaggccga
ccgccccagagagaggaaggcggctacggccccttgacccgcggcggcagagggggctgg
aggggggcgccccgcggggcccccaggggaggagggcgtggccggtag

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