Salvelinus fontinalis (brook trout): 129815733
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Entry
129815733 CDS
T11136
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04510
Focal adhesion
sfon04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129815733
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129815733
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sfon00536
]
129815733
Glycosaminoglycan binding proteins [BR:
sfon00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129815733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
129815733
NCBI-ProteinID:
XP_055725776
LinkDB
All DBs
Position
18:complement(51669236..51744518)
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AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVAIQVVLLAVVKCQEEDQDLGSCMQDGQRYSDKDVWKPEPCRICVCD
TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRDGEAPPSGAPGAKGQKGEPGDITDVVG
PRGPGGPMGPSGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPSGPNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAG
PLGPRGPPGPSGKPGDDGDAGKPGKGGDRGPSGPQGARGFPGTPGLPGIKGHRGYPGLDG
LKGEGGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGSRGESGTPGSPGPAGASGNPGTDGIGG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPAG
PQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGG
VSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPGGSSGEDGRPGPPGPMGARG
QPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG
ASGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGFAG
PPGSDGQPGVKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPSGATG
FPGAAGRVGPPGPNGNPGAAGPSGPAGKDGPKGVRGDGGPPGRQGDAGLRGAAGAPGEKG
DAGEDGPSGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGGSGDRG
PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGIKGDRGNTGPAGAPGASGANGAPG
PVGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTG
LQGLPGPPGQAGDQGASGPAGPSGSRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETG
PSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVDA
TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNM
ETGESCVYPKPASIPKKNWWSSKSKAAKHVWFGETMNGGFHFSYGDDSLAANTASIQMTF
LRLLSTEASQNLTYHCKNSVAYMDGATGNLKKAVLLQGSNDVEIRAEGNSRFTYTVMQDG
CTKHTGAWGKTVIDYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcgaggactgtactgctacttgtagcaatccaagttgttcta
ttagccgttgtcaaatgtcaggaagaagaccaggacctaggcagctgtatgcaggacgga
cagcgctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgcgac
acgggaactgtcctgtgtgacgaaataatctgcgaggagattaaagactgccccaaaccc
gagatcccattcggagagtgttgccccatctgcgtgcgggacggggaagctcccccaagt
ggggccccgggagctaagggtcagaagggggaaccaggagatatcaccgatgtcgtagga
ccaagaggacctggaggccctatgggcccctcaggagagcagggaccacgcggagacaga
ggagacaaaggcgataagggcagtcccgggccccgtggcagagatggcgagcctggtacc
cctggtaaccccggcccccccggaccctcaggacctaacggacctcccggccttggagga
aactttgctgctcagatggctggaggatttgacgagaaggctggcggagcacagatgggt
gtgatgcaaggaccaatgggccctatgggtcctcgagggcctcctggcccctctggagct
cctggcccacaaggtttccaaggcaaccccggagaggctggagagcccggatcagctggc
ccgttgggtccccgtggtccacctggaccctctggtaaaccgggagatgacggtgacgct
ggcaaacccggcaaaggtggtgatcgtggaccttctggtcctcagggagctcgtggattc
ccaggaactcccggtctgcctggaatcaaagggcatagaggttatccaggtcttgatgga
ctcaagggagagggtggagctgctggttctaagggagagtctggtgcgcccggtgagaat
ggcgctcccggacccatgggaccacgtggtctgcccggtgagagaggtcgccccggtccc
tctggagctgctggtgctcgtggtaatgacggtctgcccggccctgctggtcctcctggc
ccagttggtccatctggtgctccaggcttccccggctctccaggttctaagggagaagct
ggccccaccggtgctcgtggacctgagggcgcccagggatcacgtggagagtcaggaacc
cccggatctcccggacccgccggcgcttctggtaaccctggaactgatggtattggtgga
gctaaaggatcagctggtgctcctggtatcgctggtgcgcctggcttccccggaccccgt
ggccctccaggaccccagggagccactgggcctctcggaccaaagggaacatctggtgac
cctggtatcccaggtttcaagggtgaggctggacccaaaggagagattggacccgcgggt
ccccaaggagcccttggccctgcaggagaggaggggaagaggggacccagaggagagccc
ggcgcagctggacctctcggacctcccggagagagaggcgcccccggtaaccgtggtttc
ccaggtcaggatggtctggctggtcccaagggagcccctggcgagcgtggagttggaggc
gtgtctggccctaagggagccggcggtgaccctggtcgccctggcgagcccggtcttcct
ggtgcaagaggtcttactggtcgtcccggtgatgcaggtcctcaaggaaaagttggaccc
ggtggttcttctggtgaggacggtcgccccggacctcctggccctatgggagcccgcggt
cagcctggcgtgatgggattccccggacccaagggagccaacggcgaacctggcaagggc
ggagagaaaggattgctcggtgcgccaggtctgagaggtcttcctggtaaggatggtgag
accggagctgctggaccccctggccctgctggccctgctggagagagaggagagcaagga
caacctggaccttctggcttccagggtctgcccggacctcccggaccccctggtgagggt
ggcaagccaggtgacatgggagttccaggagagggtggagctgctggtgccactggacca
agaggtgagcgtggtttcccaggagagagaggaggtgctgggcctcaggggctgcaggga
ccccgtggtcttcctggaactcctggaactgacggacctaagggcgcgatcggaccaggt
ggtgcatcgggtgcccaggggccccccggtctgcaaggtatgcccggagagagaggagcc
tcaggcatccccggacctaagggagacagaggtgacaacggagagaagggacctgagggt
gcttctggcaaagacggttcaagaggtttgactggtccaattggtcctcctggcccagct
ggtcccaatggagagaagggtgaatctggtccctctggaccttccggtgctgctggtgcc
cgaggtgctcctggtgacaggggtgagactggacctcccgggcctgctggcttcgctggg
cctcctggatctgatggtcagcccggagtcaagggagagcagggagagggtggacagaag
ggagacgctggtgcacccggaccccagggaccctccggagctcctggaccttccggacct
actggcgtttctggacctaaaggtgctcgcggtgctcagggaccctctggtgccactggt
ttccctggagctgccggcagagtcgggccccctggtcccaatggtaaccctggtgctgct
ggtccctctggccctgctggtaaagatggtcctaagggagtgcgtggagacggtggaccc
ccaggcaggcagggagacgctgggctgcgtggagccgctggagcccctggagagaaggga
gatgctggagaggatggtccctctggtcccgatggtccttcaggtccttcaggtctggct
ggacagcgtggtattgttggtcttccaggacagcgtggagagagaggtttccctggcctg
ccaggaccctctggtgagcctggtaaacaaggatctcctggtggaagcggagaccgtggg
ccccctggccctgtggggccccctggactgactggacccgctggagagcccggtagagag
ggcaacgctggttctgatggaccccctggtagagatggagccactggaatcaagggtgac
cgtggtaacaccggtcctgctggtgctcctggcgcctcaggagctaatggtgcccccggc
cctgtcggccccaccggcaagcagggagacaggggagaggctggagctcaaggaccagct
ggacctgccgggcctgctggagccagaggaatggctggaccccaaggaccccgtggagac
aagggtgaggctggagagggtggtgagagaggacagaagggacacagaggattcactggt
ctgcagggtctgcccggacctcccggtcaagctggagaccagggtgcatctggacctgcc
ggaccaagtggatcaagaggaccccccggaccagttggtccctctggaaaggatggatcc
aacggtatgcccggccccatcggacctcccggaccccgtggtcgctctggagagactggt
ccctctggtccccctggaaactccggaccccctggtccgcctggtcctcccggccctggt
atcgacatgtctgccttcgctggcctgtctcagcctgagaaatcccccgatcccctgagg
tacatgagggccgaccaggcctccggaaacctgaggacgcacgacgccgaggtggacgcc
acgctcaagtctctcaacaaccagatcgaaaacatccgctcccccgagggctccaagaag
aaccctgcacgtacttgcagagacctgaagctgtgccaccctgactggaagagtggagag
tactggatcgaccctaaccagggctgcaccatagatgccatcaaggtctactgtaacatg
gagactggagagtcctgcgtctaccccaagcccgccagcatccccaagaagaactggtgg
tccagcaagagcaaggctgccaaacacgtctggttcggggagaccatgaacggaggattc
cacttcagctatggcgatgacagcctggctgccaacacggccagcatccagatgaccttc
ctgcggctgctatccaccgaggctagccagaacctcacctaccactgcaagaacagtgtg
gcttacatggacggggccacgggcaacctgaagaaggccgtgctgctccaaggctccaac
gatgtggagatcagggccgagggaaacagccgcttcacgtacaccgtcatgcaggacggc
tgcacgaaacacactggagcatggggcaagacagtgattgactacagatcccagaagacc
agccggctgcccatcgtggacattgctcccatggatattggaggagcggaccaagagttt
ggagtcgacgttggtgcagtctgcttcttgtaa
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