Salvelinus fontinalis (brook trout): 129816755
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Entry
129816755 CDS
T11136
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfon03000
]
129816755 (sox1a)
Transcription factors [BR:
sfon03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
129816755 (sox1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
129816755
NCBI-ProteinID:
XP_055727589
LinkDB
All DBs
Position
19:complement(42063400..42067639)
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AA seq
341 aa
AA seq
DB search
MYSMMMETDLQSPGPQTNTHLGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGAGGGGMGLGVGMGSSGVGQRLESTGGHGGSTSSGYAHMNGWANGAYSGQM
AAAAAAAAMMQEAQLAYSQHPGSGHHHHSHHHHHPHNPQPMHRYDMSALQYSPISNSEGY
MSASPSGYGGITYTQHQSSGVSSSAAMGTLGSLVKSEPSVSPPVSTHSRGPCPGDLREMI
SMYLPTGEPGDPSVQSRLHALPQHYQSATAGVNGTVPLTHI
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacctccagtcccctggaccccaaacgaacacacat
ttggggcaaacggggccgaacagtgggtccaaagcgaatcaggaccgggtgaagcgtccg
atgaacgcgttcatggtgtggtcccgcgggcagcggagaaagatggcccaggaaaacccc
aagatgcacaactctgagatcagcaagcggctgggagccgaatggaaggtcatgtccgag
gcggagaagagacccttcatcgacgaggcgaagcggttacgagcaatgcacatgaaggaa
cacccggattacaagtacagaccgagacggaagaccaagacgctgctgaaaaaggacaaa
tactctctggccggtggcctgctctctggggctggcggcggtggaatgggtctgggtgtc
gggatgggttcatccggcgtcggccagaggttagagagcaccgggggccacgggggctcc
accagctcaggctacgctcacatgaatggctgggcgaacggtgcgtactcggggcagatg
gctgcagctgctgcggcggcggcgatgatgcaagaggcgcagctagcttacagccagcac
ccgggcagcgggcatcaccaccactcacaccaccaccaccacccgcacaacccccagccc
atgcaccgctacgacatgtcggcactccagtacagccccatctcgaactctgagggctac
atgagcgcatctccgtccggctatggcgggatcacctacacccagcaccagagctctggc
gtctcctcctcggctgccatgggcacgttagggtcgctggtgaagtcagagccgagcgta
agccctcccgttagcactcactccaggggcccttgccccggagacttgagagagatgata
agcatgtatttaccgaccggagagcccggggacccgtcggtgcaaagtagactccacgca
ttgccgcagcattaccagagtgcgacggctggggtgaacggaacggttccattaacgcat
atatag
DBGET
integrated database retrieval system
