Salvelinus fontinalis (brook trout): 129816800
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Entry
129816800 CDS
T11136
Name
(RefSeq) collagen alpha-2(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04382
Cornified envelope formation
sfon04510
Focal adhesion
sfon04512
ECM-receptor interaction
sfon04518
Integrin signaling
sfon04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129816800
04518 Integrin signaling
129816800
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129816800
09142 Cell motility
04820 Cytoskeleton in muscle cells
129816800
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
129816800
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfon04147
]
129816800
00536 Glycosaminoglycan binding proteins [BR:
sfon00536
]
129816800
Exosome [BR:
sfon04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129816800
Glycosaminoglycan binding proteins [BR:
sfon00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129816800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129816800
NCBI-ProteinID:
XP_055727676
LinkDB
All DBs
Position
19:complement(44177617..44309930)
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AA seq
1683 aa
AA seq
DB search
MKFEVHMSGTMQTRHQIELKSLKFLFLCLSVAILASGVDAGGKKDNGPCGGRDCSGGCKC
FPEKGARGQPGPLGPQGPHGPPGGLGDSGVQGVQGEKGDRGRGGFIGPKGSVGMTGVPGF
SGSDGIPGHPGQAGTRGKPGADGCNGTHGDSGLAGKPGYDGQPGYNGQAGRKGQKGDTLE
LSVFMERFRGDSGQPGYPGFVGPQGYPGRSGYRGLPGPQGPLGFPGLPGPKGTMTKVLKG
VKGEAGEAGQQGPPGNSTHQHTSPLTGPYGRKGDKGLKGETGVEADNKGETGIMGMPGQR
GVPGRDGEQGLRGDLGEPGFRGRDGQQGAIGEPGELIYYEGPSGGPNRVGPPGQLGPQGE
MGLQGEKGLPGRAGPPARKSDSQLQVEYLWGPFGEPGVKGETGPPGEPGIPALSPGPPGI
DGISGLRGPPGPPGSWADFYKGFAGSRGRPGSAGRKGLKGDHGLCECNIVHSPPGLPGPA
GSQGDPGMSGEFGQQGEPGEPGPQGVIGLPGFPGATGQPGPKGRKGELIWAKEKGYAGDP
GDPGATGDPGLQGFPGPSGINGFPGNRGLSGDAPEGLTGEKGYPGRSGLPGLFGQMGEPG
RVLGATKGVRGLQGDDGDDGEPGYAGVKGRAGDPGVSGCSPRGDGRLNDKGDCDAVPGPP
GMPGPQGLVGFPGIPGQNGFTGPLGDDGAKGEIGEQGIGGSPGQPGFTGPRGDLGQPGTK
GKPGDQGQPGQQGRDGESGEKGPHGEIWGASTGQTGEVGLPGEQGPKGFSGEPGNEGYPG
MGGMPGMIGFKGDVGPSGLQGEQGRPGAAGKYGWKGVPGQAGVHGPTGSFGQPGLSGGRG
DQGDPGAPGPIGLKGTPGEFGGLGAEGNTGHLGDPGEPGPTGHSGLPGFKGIKGSRGMSG
FGGMPGESGLKGFSGQKGEDGIPGGFGQKGIMGDYGSKGERGLSGLPGEKPHIPRQIIND
MKGTKGEDGTPGQIGFTGPRGPKGFPGVPGMEGYHGVPGDPSDEKGFPGNPGAQGLPGPK
GMPGPTGSNGISGFPGMSGHRGEKGTPGAYGSSGDPGGKGVKGEEGPIIDMPGSTGLRGE
DGFPGVPGQKGYIGNLGDRGGGGFHGIDGMKGGPGEPGTGGPIGSDGQGGFQGNQGTKGW
PGVPGESGTNGRPGFPGQRGFPGLKGILGLDGLKGEKGIPGLPGQDNLGTPGVPGAKGTR
GETGIPNSEVGTPGSLGLKGVQGQPGDQGQVGPPGFQGPHGPQGTSDTPGPSGDPGFPGS
KGLPGFPGPRGYPGEPSPYGEKGLAGHYGFPGFSGLKGKQGDQGPSGYKGQSGVSGKKGV
KGEQGMMGIPGRFGFQGDRGPSGPKGSTGPIGYPGAPGNQGPAPVPLRMPGERGAPGPQG
IRGPEGVRGETGPKGPPGAPGYLGPQGQKGMPGVGGRPGTPGYRGNDGGRGHLGLQGMEG
HRGNPGTTGLPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYFEGQEKAHN
QDLGLAGSCLPRFNTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVEEDEIKPYIS
RCSVCEAPSVAVAVHSQDITIPQCPVGWRSLWIGYSFLMHTAAGDEGGGQSLSSPGSCLE
DFRTTPFIECNGAKGTCHYFANKHSFWLTSIEQSFQAEPASETLKAGQLLSRISRCQVCM
KNL
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgaagttcatatgagcgggacaatgcagacaagacaccagattgaactgaag
agcctgaagtttctgtttctatgtctttccgtggccatcctagcatcaggagttgacgca
ggtggtaagaaggacaatgggccatgtggaggaagagactgcagcgggggatgcaaatgt
ttccctgagaagggcgccagaggccaacctggtcctcttggcccgcagggaccccatggg
cctccagggggcctaggggactcaggagtccaaggagtccaaggagagaagggcgaccgg
ggcagaggaggcttcatcggccccaagggttctgtggggatgactggtgttccagggttt
tctggatcggacggtattcctggccatccaggacaggcagggactcgtgggaaacctgga
gcagacgggtgcaacggaacacatggagattcagggttggcagggaaaccaggctacgat
ggccagcccgggtataatggtcaggcaggcagaaagggacagaagggagacactctggag
cttagtgtgttcatggagcggttcaggggagattcaggacagcccggatatcctggattt
gttggtcctcagggttacccaggtcggtcgggctacagaggactcccaggaccacagggc
ccattagggtttcctggccttcctggaccaaagggcaccatgaccaaagtgttgaagggg
gtcaaaggagaagcgggtgaggctggacagcaaggtcccccagggaactccacccatcag
cataccagcccacttaccggaccctacggcagaaagggtgacaaagggttgaaaggtgaa
actggagttgaggctgacaacaaaggagagactgggattatggggatgcctgggcaaagg
ggtgtccctggtcgggatggagagcaaggactaaggggggaccttggagaaccaggattt
aggggcagagatggccaacagggtgccatcggagaacctggggagttgatctattatgaa
ggtccctcaggaggacctaacagagttggcccccctggacagctgggaccccagggagag
atgggtttgcagggggagaaaggtctgccaggccgggctggacctcctgctaggaagagt
gatagtcaattacaagtggagtacctgtggggtccgttcggggaaccgggggtaaaggga
gagacgggcccacctggagagccaggtatccctgctctcagccccggacccccaggtatc
gacggcatttctgggttgaggggcccacccggaccaccaggatcatgggcggacttctac
aagggatttgctgggtcgagagggcggccaggctctgcagggagaaaaggactgaaaggt
gatcatgggttgtgtgagtgcaacattgtccactctcctccgggcctgcctggccctgct
ggtagccaaggcgaccctggaatgagtggcgagtttggtcagcagggcgagccaggcgag
ccaggaccccaaggtgtcatcggactgcctgggttccctggtgccacaggacaaccgggt
ccaaagggcaggaagggcgagttgatttgggccaaagagaaaggatatgccggggaccca
ggagatccgggtgcgactggtgacccaggattgcagggcttccctgggccaagtgggatc
aatggattccctgggaaccgtggtctttcaggggacgcacctgagggactcactggagaa
aagggttatcctggccggtcgggtctccctgggttgtttggacagatgggagaaccggga
cgagttctaggtgccactaaaggggtcagagggttacaaggcgatgatggggatgatggg
gagccgggttacgctggtgtcaaaggtcgagctggagatccaggagtgtctggctgtagt
ccgagaggagatggacggctgaatgacaaaggcgattgtgatgccgtacccggaccaccc
ggtatgccaggaccccaagggttagtgggtttcccaggcatcccaggtcaaaatggattc
acaggtccacttggagatgacggggccaaaggagagataggagagcaaggcataggaggg
tctcctggacagccaggtttcactggcccccgtggagacttgggtcagcccggcaccaag
ggtaaacctggagatcaaggtcagcctggccaacagggtcgggacggggagtccggggaa
aagggaccacacggggagatctggggagcgtcgaccggacaaactggagaagtgggtctt
cctggagagcagggacctaaaggttttagcggagagcctggaaacgagggctacccaggg
atgggtggtatgcctgggatgattgggttcaagggcgacgtgggtccttcaggtctacag
ggggagcaaggaagaccgggagctgctgggaagtacggctggaaaggtgtacccggacag
gctggagtccatggaccaacaggaagcttcggacaaccaggtttgagcggaggaaggggt
gatcagggggatcctggcgccccggggccaataggactaaaggggacaccaggggagttt
ggaggtctgggtgctgagggaaacaccggacacctgggtgaccctggagagccaggacct
acaggacactctggcctgccagggttcaaaggtatcaaaggttctcgtggcatgtcaggg
tttggaggtatgcccggtgagtcgggcctgaagggcttctctggacagaagggagaggat
ggcattcctggcggatttggacagaaaggaatcatgggcgactatggttcaaagggtgaa
cgtggtctgagtggcctgccaggcgagaagccccacatccctcgtcagatcatcaatgac
atgaaggggaccaagggagaagatggaacaccaggacaaatcggatttactggacccaga
ggtcctaaaggttttcccggagttccgggtatggagggctaccatggcgttcccggagac
cccagcgatgagaagggtttcccaggcaacccaggggcgcagggacttccagggccaaaa
ggaatgccaggtccgactggatcaaatggaatcagcggctttcctgggatgtctggtcac
aggggggagaaaggtacccccggtgcctacggatcttcaggagatccaggagggaagggt
gtcaaaggtgaagagggtcccataatcgacatgcccggatccacaggactgaggggggag
gatggtttcccaggggttccaggtcagaagggctacattgggaatctgggagacaggggc
ggtggtggtttccatggtattgacggcatgaaaggggggccgggagagcctggcacagga
ggtcctataggatctgatggtcaaggagggtttcaaggcaaccagggtacgaagggatgg
cctggggtccccggagaatcaggcacaaatggacgaccaggcttcccaggacagagaggt
tttcctggactaaagggtatattgggactggatggactgaagggtgagaagggcatccct
ggacttccaggtcaggataacttgggaaccccaggtgttcctggtgctaagggaacgagg
ggtgagacaggtatacccaactcagaggtcgggaccccaggatcgctgggtttgaagggc
gttcaaggacaaccaggtgaccagggccaggtgggacccccagggtttcagggccctcat
ggaccacagggcacctcagacacacctggaccatcaggagaccctggcttccctggatcc
aaagggctgccaggtttccctgggccccgtggatatcctggtgagccctctccatatgga
gagaagggtttagctggccactatggcttccctggattctctggtctgaaaggaaagcag
ggggatcagggaccatcaggctacaaaggacagagtggagtgtctgggaagaaaggtgtg
aagggagagcaagggatgatgggaattcctggtaggtttggtttccaaggagaccgaggt
ccttccggcccaaaaggaagtactggacccataggttatccgggagccccaggtaaccag
ggcccagccccagtccccctcaggatgccaggagaaaggggtgctccagggcctcagggc
atccgaggaccagagggggtacgaggggagactggtccgaaaggaccccctggagctcca
ggctacctgggcccccaggggcagaaggggatgccaggggtgggtggcagaccgggtacc
cccgggtaccgtgggaatgacggagggaggggccaccttggtcttcaaggcatggaagga
caccgtggtaacccaggtactacagggttgcctggcatgcctggacgcagtgtgagtgtg
ggatatctgctggtgaagcacagccaatcagagcagacccccatgtgccccgtgggcatg
tccaagctgtgggatggctacagtctactgtacttcgagggccaggaaaaggcccacaac
caggacctaggtctggcaggctcctgcctccctcgtttcaacaccatgcccttcctgtac
tgcaaccccggagacgtctgctactatgccagccgcaatgacaaatcctattggctgtcc
accaccgcaccccttcccatgatgcccgtggaagaggatgagatcaaaccctacatcagc
cgctgctctgtgtgcgaggctccgtctgtcgccgtcgccgtgcacagccaggacatcacc
atcccacaatgccccgtgggctggcgcagcctgtggattggctactccttccttatgcac
acagcagcaggtgacgagggtggtggtcagtctttgtcgtcccctggttcctgtctggag
gacttccgcaccactcccttcatcgagtgtaacggggccaagggcacctgccattacttc
gccaacaaacacagcttctggctcacctccatcgaacagtccttccaggcagagcctgcc
tccgagaccctgaaagcaggccaactcctctcacgcatcagccgatgtcaggtctgcatg
aagaacctgtga
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