Salvelinus fontinalis (brook trout): 129816801
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Entry
129816801 CDS
T11136
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04382
Cornified envelope formation
sfon04510
Focal adhesion
sfon04512
ECM-receptor interaction
sfon04518
Integrin signaling
sfon04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129816801
04518 Integrin signaling
129816801
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129816801
09142 Cell motility
04820 Cytoskeleton in muscle cells
129816801
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
129816801
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfon04147
]
129816801
00536 Glycosaminoglycan binding proteins [BR:
sfon00536
]
129816801
Exosome [BR:
sfon04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129816801
Glycosaminoglycan binding proteins [BR:
sfon00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129816801
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
FeoB_associated
Motif
Other DBs
NCBI-GeneID:
129816801
NCBI-ProteinID:
XP_055727677
LinkDB
All DBs
Position
19:44310020..44379912
Genome browser
AA seq
1644 aa
AA seq
DB search
MMVHSGTLVLLVAVSYTIFRTEAKGCSGSSCGGKCDCSGVKGEKGERGFPGLQGNMGFPG
MQGNEGPAGPMGPKGEYGESGTPGMKGTRGSNGLSGFPGNPGLPGIPGQDGPPGSSGIPG
CNGTKGDRGTDGQPGFPGLQGPPGIPGLMGMKGDPGGVLGIIPLKGDKGFPGSPGLPGPN
GPSGPEGPPGNQGSDGPRGFPGTPGPPGEKGDRLSFQSEKGDKGAQGLRGPPGPPGLPSQ
EAGGNTVTHFLPGPPGQRGETGDRGEKGSCIPYLNGVKGEQGPPGPRGKPGKDGDNGFKG
ERGFPGGPGYHGTPGEKGEKGPPAYVDSAPGSPGPPGLPGLQGERGFPGLQGDLGPPGRL
IEGPPGEKGQPGEIGQKGDRGADGDSLTGKPGQDGSIGPPGPPGPPGDEPCDPALEKGPP
GPPGPPGLQGELGQKGDQGDTCVQCEAFGPPGLPGPQGPKGLQGYPGAAGTKGDKGLPGA
TGPDGSPGNYGTPGLIGAPGAHGEPGDIYVAPGLKGDKGGSGFVGTRGLPGVDGLPGKAG
LPGLPGPKGEPARDGIKGDRGLDGEHGITGPPGERGPPGVPGFGRHGEPGEKGTSGQGGR
PGIPGQPGVKGEPGKGVSSPGPQGTPGPRGESGIRGLQGDRGPHGDPGIPGFPGQKGDTG
APGMGFSGPPGPKGYSGAPGATGLPGEPGRPGQDGFSGKPGTPGSKGEPGRGLPGPKGAQ
GPAGVTGFPGEKGNLGLAGIPGQEGHTGPPGAQGIKGDHGPPGQHGGTGPPGPPGEGEPG
APGPMGPPGESGLFGHDGVKGDKGLPGSPGLDMPGPRGEKGDSGLPGLSGSKGFPGRPGP
AGRDGFPGGAGPKGEMGVMGTPGTPGYQGPSGNPGSSGLRGDPGISGPRGEFGEPGPKGE
RGEPGLQGPAGNMTDVDMEHMKGEKGDLGDPGDPGYTGEKGYPGQPGVPGMPGKDGETGT
PGQPGDKGDTGFPGEPGSIGYPGNKGGIGEMGYPGSVGTKGDKGIVGTPGHPGFRGTEGV
KGDKGQTGLPGVGVPGPPGEKGQLGLPGFPGNAGEKGQKGGMGVPGMPGTPGTKGDTGHI
GYQGQPGQPGEKGIGGLPGSPGEPGQTGRPGEPGLQGPPGTTGEKGASGVDGIPGSSGER
GDTGLPGRGFSGTPGSSGDKGDKGSPGFPGSPGIPGIPGTRGDKGTPGFEGSHGQPGERG
LPGPAMEGPKGDQGLPGKPGEPGTSGAPGPAGVSGSVGGKGDKGDQGEPGVHGEQGFKGD
QGYPGLSGQAGLPGVDGLKGEMGLQGVPGFPGTKGEFGVVGFKGELGDRGFPGDKGNDGP
PGPPGPHTFIKGDSGFPGNEGPQGPVGPSGIPGLKGQQGVTGIQGIKGDEGNPGFNGLPG
AKGEPGLLGPSGPRGYPGPPGPDGVPGQVGPPGPSSMEHGFLVTRHSQSVEVPHCPEGTS
VIYDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTS
PEPMPMNMAPITGQSIKPFISRCSVCEAPAMVIAVHSQNIMIPSCPNGWDSLWIGYSFVM
HTSAGAEGSGQALASPGSCLEEFRGAPFIECHGRGTCNYYANSYSFWLATIEDEEMFTKP
VPTTQKAGNLRSNISRCQVCMKRT
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgatggtccatagtggtacgctggttctgttggtggctgtatcctacactatatttcgg
acagaggctaaggggtgttctgggtcatcgtgcggaggaaaatgtgactgcagtggagta
aaaggagaaaagggtgagcgggggtttcctggtctccaaggcaacatggggttcccgggc
atgcagggcaacgaggggcccgccgggccgatgggccctaagggagaatatggcgagtct
ggaactcctggaatgaaaggaacacgtggatctaatggtttgtcaggcttcccaggaaat
ccagggcttccgggtattcccggacaagatggaccccctggatcgtcaggtatcccaggg
tgcaacggaacaaagggagatcgagggacagatggacagcctgggttccctggtctacag
ggtcctcctggtatccctgggctaatgggaatgaaaggagacccaggtggtgttttagga
atcatcccattgaaaggagataaaggattccctggatcacctggtttaccgggacctaat
ggcccctcaggacccgaaggccccccaggaaaccagggatcagacggacccagaggtttc
cctggcacacctggccccccaggggaaaagggtgaccggctgtcattccagagtgagaag
ggagacaagggtgcacaagggctccgtggtccccctggcccccctggactcccatcacag
gaagcgggaggaaataccgttacgcatttcctccctggaccaccgggtcagagaggcgag
acaggagacagaggagagaaaggttcttgcattccctatctaaacggggtcaagggtgaa
caaggcccaccaggaccaaggggaaaacctggcaaagatggcgacaatggatttaaggga
gagagaggctttcctggcggccctggataccatggaacaccgggtgaaaaaggagagaaa
ggacctccagcatatgttgatagtgctcctggctctcccggcccccctggtctcccgggc
ttacaaggagaaagaggtttccctggtcttcaaggagaccttggtccaccaggcaggctt
attgaaggacctcccggagagaagggccaaccaggagagatcggtcagaagggagacagg
ggtgcagatggggactctctcacaggaaagcctggacaagatggatccatcggaccccct
ggacctcccggacctcctggtgatgagccatgtgatccagcccttgagaagggaccaccc
gggccccccggcccaccaggactacagggggagttgggacagaaaggtgatcagggagac
acgtgtgtgcagtgtgaagccttcggcccccctggactccctggtccacaggggcctaaa
ggactgcaaggatatcctggagcagcaggcactaaaggagacaagggcctgcctggagct
actgggcctgatggaagccctggtaattacggtactcctgggttgataggggctccagga
gcccatggtgagcctggggatatctacgtggctccagggctgaagggtgacaaaggaggg
tctggcttcgtgggcacacgaggactgccaggtgtggatggactgccagggaaagctgga
ctaccaggcctgcctggacccaaaggagaacctgcccgagatggcatcaagggggaccgt
ggtctggatggggaacatgggatcactggacccccaggagagaggggtcctcctggtgta
ccagggtttggccggcatggggagcctggagagaagggtacatctggccaaggaggccga
cctggaatccctggacaaccaggagtgaaaggtgaaccaggaaaaggtgtgagttcacct
ggaccccagggcacccctggacctcgaggagaatctggcatacgtggactacaaggtgac
cgaggacctcatggagacccaggaattccaggattcccaggacagaaaggtgacacaggt
gcacctggcatgggattctcaggaccacctgggcctaaaggatattctggagctccagga
gccactgggttgccaggagagcctggaagacctggacaggatggtttctctggaaaacca
ggcacacctggttcaaagggtgagccaggtaggggtctacctggacctaaaggtgctcag
ggtcctgccggagtgacaggtttccctggagagaaaggcaaccttggtctagctggtatt
cctggacaagagggacacacaggaccacctggagctcagggcattaaaggtgaccacggc
ccccctggtcagcatggtggcacaggaccccctggaccccctggagaaggagaacctggt
gcccctggacccatgggaccccctggagagtcaggcctcttcggtcatgatggtgtgaag
ggtgataagggtttgcctggctctcctggtctggacatgcccggccctcggggagagaag
ggagactcaggattacctggactttctggttccaaagggtttccaggacgaccaggcccc
gccggcagagatggattccctgggggggcaggccccaagggagagatgggagtcatggga
acacccggaacacccggatatcagggtccttctgggaaccctggaagttcaggactgaga
ggtgaccctggtatctctgggccaaggggggagttcggtgagcctggacccaaaggagag
aggggagaaccaggtctccagggccctgctggcaacatgactgacgttgacatggagcac
atgaagggcgagaaaggagacctcggagatccaggtgaccctggatacacgggagagaag
ggttatccaggacagcctggagtacctggtatgccaggaaaggatggagagaccggtaca
cctggtcaaccaggtgataaaggagacacaggttttcctggagagcccggcagtattgga
tatcctggaaataaaggaggcattggcgaaatgggatatccaggttctgtaggtacgaag
ggtgataaaggcattgtgggcacaccgggtcatccagggttcaggggtacagagggggtg
aagggagacaagggacaaaccggtctgccgggtgttggagtaccaggaccccctggagag
aagggtcagttgggtctgcctggtttccctggtaacgcaggagagaagggtcagaaggga
ggaatgggagtgcccgggatgccaggaacaccaggaaccaagggagacactggacacatc
ggttaccaaggtcagccgggtcagccaggagagaagggtattggtgggcttcccgggtca
ccaggagagccaggtcaaacaggtcgaccaggtgagcctggtctgcagggtccaccaggt
acaaccggagagaaaggagcgtcaggagtggacggcatacctggatcatcaggagagaga
ggagacacaggtttacccggcaggggcttctcagggacaccaggttcatctggggataaa
ggtgacaaaggctctccaggtttcccaggctctccaggtatcccgggtatcccagggacc
aggggagacaagggtacgccaggcttcgagggttcccatggacagccaggagaacggggt
ctcccaggacccgccatggaggggcccaaaggagaccaaggactgccaggaaagcctgga
gaaccaggtaccagtggtgctccaggtcctgctggtgtttcaggcagcgtgggggggaaa
ggagacaaaggggaccagggtgaaccaggagtacatggggagcagggtttcaaaggagat
caaggataccctggactttctggtcaagctggccttccaggtgttgatggactgaaggga
gagatgggactgcagggagtgcctggtttcccagggacaaagggtgaattcggagtggtt
ggattcaaaggagagctgggggacagaggattcccaggagacaaaggtaatgatggtcca
cctggtcctcctggcccccacaccttcatcaagggagacagcggcttccctggtaatgag
ggccctcaggggcctgtggggccctcgggtatccctgggctgaaaggacagcaaggtgtg
acaggtattcagggtattaaaggtgatgaggggaacccagggtttaatggtctccccggc
gccaagggagaaccaggcttgcttggtccctcaggacccagagggtaccctggaccccca
ggacctgacggtgttccgggtcaggtgggtcctcctggcccctcctccatggaacatggt
ttcctggtaaccaggcacagccaatcggtggaggttccacattgtcctgagggaacgtca
gtgatctatgatggatattccctactctacgttcagggcaacgagcgctcccacggccag
gacctgggtacggctggtagctgtctaaggaagttcagtcccatgcccttcctcttctgt
aacatcaacaacgtctgtaactttgcctcccgtaacgactactcctattggctcacctca
cctgagcccatgccaatgaacatggcccctatcactggccagagcatcaagcctttcatt
agcaggtgttcagtgtgtgaggctcctgccatggtgatagcagtgcacagtcagaacatc
atgatcccatcatgccccaatggctgggactcactctggattggctactccttcgtcatg
cacacaagtgcaggtgctgagggttctggacaggcactggcatctcctggctcctgtcta
gaggagttccgtggcgctccgttcatcgagtgtcacggccgtggaacctgcaactactac
gccaactcctacagcttctggctggccaccattgaggacgaggagatgtttacgaaacct
gtgcccaccacacaaaaggcaggaaatctccggagtaacattagccgttgccaggtgtgc
atgaagaggacatag
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integrated database retrieval system
