Salvelinus fontinalis (brook trout): 129817839
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Entry
129817839 CDS
T11136
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129817839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129817839
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129817839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
129817839
NCBI-ProteinID:
XP_055729401
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All DBs
Position
20:42315028..42404710
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AA seq
719 aa
AA seq
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MSRHRNVRGYNYDEDLDDDDMYGQSVDDDYCISPATAAQFIYSSRQERPNVEPPLEEEGM
EEDEAVPTSPSLTHNLNPLDQGKLYSCLDQMCAVLGDAVPESVLTQAALRCAFDPQRALD
AVLSDESAELPALDARTNNDAPLPQRANKETAVVPRANQEVSAAPRPEKAKGREAGQCQL
DSEVLPKVARMTVSGKRRTMGFDVPSTEENGVVPSPSVHRGGSPDDMTMKTSPDTPSKRP
ETPSKGFGVSEEPPSVPTPGRTPGKAKQQLNVRAELEKRQGGKSLLNLVVIGHVDAGKST
LMGHLLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERNRGVTMDVGMTKFET
ASKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHGLLVRS
LGVTQLAVAVNKMDQVNWQEERFKEIISKLGHFLKQAGFKDSDVFYVLSQDSDVFYVPTS
GLSGENLTTKSSALALTSWYSGPCLLEQIDDFKPPQRSIEKPFRLCVSDVFKDQGSGFCV
TGKIEAGYIQTGDRVLAMPPNETCTVKGITLHDEPLDWAAAGDHVSLTVTGMDIIKINVG
CVFCDIKEPIRACSRFRARVLLFNIEVPITQGFPVVLHYQTISEPATIRKLVSVLHKSSG
EVLKKKPKCLGKGMNAMVEILTQRPVALELYKDFKELGRFMLRYVGSTIAAGVVTEIKD
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacagaaatgtccgaggctacaactatgatgaagaccttgacgacgacgac
atgtatggacagtctgtcgatgacgactactgcatctcccctgcgacagcggcccagttc
atctactccagcaggcaggagaggcccaacgttgagccacccctagaggaggaggggatg
gaggaagatgaggccgtacccacctccccctccctcacacacaacctcaaccccctggac
caaggcaagttgtactcgtgtctggaccagatgtgtgcagtgctgggtgatgccgtgccg
gagtcagtccttacccaggctgccttgcggtgcgccttcgaccctcagagagccctggat
gccgttctatcagacgagagcgccgagctgccggccctggacgccagaaccaataatgac
gcgccactgccgcagagagcgaataaggagacggcggttgtaccaagagccaatcaggaa
gtctcagctgcaccgcgaccagagaaagctaagggccgtgaggcggggcagtgtcaactg
gactcagaggttctgcctaaagtggcccgcatgaccgtctcagggaagagacggaccatg
ggctttgacgtgccgagtacagaggagaacggggttgtccccagcccctccgtccatcgc
gggggtagccctgacgacatgaccatgaaaaccagccctgacaccccctccaagcgtccg
gagacaccctctaaagggttcggggtgtcagaggagcccccttccgtccccaccccagga
cgtaccccggggaaggccaagcagcagctgaacgtccgggcagagctggagaagagacaa
gggggcaagtctctactcaacctggtggttataggtcatgtggatgctgggaagagtacc
ctgatgggtcacctgctgtacctgttgggaaacgtcaataaacgcaccatgcacaagtac
gaacaggagtccaaaaaggctggcaaggcctcgttcgcctacgcgtgggttctggacgag
accggcgaggagaggaacaggggtgtaaccatggacgtggggatgactaagtttgagacg
gcctctaaggtggtgactctgatggacgctcctggacacaaagacttcatcccgaacatg
atcactggagcggcccaggcggacgtggcggtgttagtggtcgatgccagcagaggtgag
tttgaggcggggttcgaggcggggggtcagacgcgagagcacggccttctggtccgttcg
ttgggcgtcacgcagctcgctgttgccgtcaacaagatggaccaggtaaactggcaagag
gagcgattcaaagagatcatctccaaacttggacatttcctgaaacaggctggattcaag
gactctgatgtgttctatgttctctcccaggactctgatgtgttctacgtgccaactagt
ggtctatcaggagagaacctgaccactaagagttctgctctggcgctaacatcctggtac
tctggaccctgtctgctggaacagatcgatgatttcaaaccaccccagaggtcgatagaa
aagcccttccgactgtgtgtctcggacgtcttcaaagatcagggctcagggttctgtgta
acagggaagatcgaggcgggctacattcagacaggagacagagtactggccatgcccccc
aatgagacatgcactgttaaaggtatcactctccacgatgagcctctggactgggcagca
gcaggagatcatgttagtctgactgtcactggcatggacatcatcaagatcaatgtgggc
tgtgtgttctgtgatattaaggagccaatcagagcgtgttcccgcttcagggccagagtc
ctactcttcaacatagaggttcccatcacacagggcttccccgttgtgttgcactaccag
acgatcagtgaacctgccaccatcaggaagctggtcagtgttctgcacaagagcagcggg
gaggtgctcaagaagaaaccaaagtgtctgggtaagggtatgaacgcgatggtggagatc
ctgacgcagagacccgtggcgttggagctctataaggacttcaaggagctgggacgcttc
atgctgagatacgtagggtcaaccatcgctgccggggtcgtcaccgagatcaaagactga
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