Salvelinus fontinalis (brook trout): 129818242
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Entry
129818242 CDS
T11136
Name
(RefSeq) BRCA1-A complex subunit RAP80-like isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129818242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfon03400
]
129818242
DNA repair and recombination proteins [BR:
sfon03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
129818242
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Paralog
GFIT
Motif
Pfam:
RAP80_UIM
Motif
Other DBs
NCBI-GeneID:
129818242
NCBI-ProteinID:
XP_055729968
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Position
2:complement(38388412..38407551)
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AA seq
1158 aa
AA seq
DB search
MPPRKKRENRYTDDGPRKRRRAVDHEEDRVVISDSDEDEDFRPTSFEEHKREESKIRSNE
MTEEEMLDLAMRLSEQEASNTALRQRQEEETMRKAIAESLYADRPTHPHSESLLVDGSPT
QKCQRSPPEAESSIQPPRRKLSYPNHGVADREGAHDVGVSVGVANPETSRRGKKEGSPLL
DMPDLSQTQKVYSQSSPLSQASTSMPLSSQEGSSLKNPFGNLSAHVESQECKSTENESQL
RKKSPVLPLATTVPSASKLILCLHKLSQDLLVDCQASGFLLCSQEGPPSLTLSTKSQMSP
SFQPKSPTFSKSPVFSRTARTAGGEPGQGSPPMFSETDSGKEEKEGSPTFPRSAMFSSSD
TGEEEKAASPTFPGSPVFPRTDQIRDQGPQDCIESVSTSEDHEDRDREDVKSSESSKCLP
PRLRTTLSLNKRLMPIRKTAGVADKVVDQEERQGESSQSTVNRISTPATFAAEEDLNSEE
LTLALETQPMQELTSNMALRWSDDDEEEDGPAKSAQLPSPVFPQENDLPQPSNQCLSTNT
NHHCSPPHIHSPCLVPKKRTHISEDSACEDGESRSKRIRKKFTFKGMYGSPSPFLPRQAA
GRGSQDEAQARYPSSHQPQASSSHLSPPTGGQGDGGVVCYYWGVPFCPRGQDPDAYTQVI
MSQLEVYEKSLKEAQRGLLRKAGWGEPVLPGHPERPFSRRGRPKRHRAPELLEEEEEEVQ
GVRNQQEEVVEVVEDDGEEREWRQSQGGTKEGGRRGRLEWKDYQSLFVSTPEQDEKSPSP
VFHVESNQQQILPRRSLGLRKEERRPLPDPLEKEKEEDENEGEKREEEERMGEEVVDVGG
LEVPGIRNDETQLGDDGTQDLMVTSPAQPQPERQSLPQIQTFLSSPHPLDQRVEGMEVEE
ERRSGPVRSPARGEDVRVEMEETGEVQGGVSEPAPPQSPSMDCPMCMRPFPLTEIELHAA
YCDGSTANMEEEEMMAQSQSQVTVKSHRKRTRRGEKIGEEQPCSSGSGKAVQGEKCFLCQ
QLFHLRDYEKHVEDCIRNQDVSKAISRAGPSGDLLSALDQTEHRDSGTAEAGPCDTAFRS
QHSGLIEALGESGGSGDIAVPGFRVSTSPIRSFTSISEATDCLIDFKRQYSSCTSSSSSS
RPRQRGRKFNRKFKFTKK
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcggaaaaagcgagagaacagatacactgatgatggtcccaggaaacgacga
cgagcagttgatcatgaagaggacagagtcgtcatctcagacagcgacgaggatgaagat
ttcagaccaacatcattcgaggagcacaaacgggaggagagtaaaataagatctaacgag
atgactgaggaagagatgctggacctggccatgaggctgagtgaacaggaggccagcaat
actgctctcaggcaacgacaggaggaggagaccatgaggaaggccatcgctgaaagcctc
tacgcggacagacccactcatccccactcagaatctctgctggtggacgggagccctacc
cagaaatgtcaacgttcccctccagaggcagagagcagcatacagccccccaggcggaag
ctctcttaccccaaccatggtgtggctgacagggagggagcccacgatgtaggtgttagt
gtaggggttgctaatccagaaaccagcaggagggggaaaaaggagggtagtccattacta
gatatgcctgacctgtctcagacccagaaggtctactcccagtcttctcccctcagccaa
gcttccacctccatgcctctctcttcacaggaggggtcttctctaaagaaccctttcgga
aacctctcagcccacgtcgaatctcaggaatgcaagtccacagagaatgagtcccaactc
aggaagaagtcccctgtattacctctcgctaccacagtcccctcagccagcaaactcatc
ctgtgcctgcataagctcagccaggacctcctagtagactgtcaggcctctgggttccta
ctatgttctcaagagggtcctccaagcttaactctttccacaaagtcccagatgtctccg
tcttttcagccaaagagccctacattctccaaaagccctgtgttctccaggacagcgaga
actgcaggcggggaaccaggccaagggagtccccctatgttctctgagactgattcagga
aaggaagaaaaagagggaagtccaacttttcctagaagcgccatgttctccagtagtgat
acaggagaagaagagaaagcggcaagtcccacctttcccggaagcccagtcttccccaga
actgatcagataagggaccagggtccacaggactgtattgaaagtgtatctacatcagaa
gaccatgaggatagagacagagaggatgtgaagagcagcgaatcctcaaagtgccttcca
ccacgcctcagaacaaccctgtccctgaacaagagactcatgcctataaggaagacagct
ggagttgcagacaaagttgttgaccaagaggaacgtcagggtgaatcctcgcagagcact
gtaaacaggattagtacgcctgcaacgtttgctgcagaagaagaccttaattcagaggaa
cttacattggctttggagactcagccaatgcaggagttaaccagtaatatggcgctacgc
tggtcagatgatgacgaagaggaagacggtcctgcaaagtcggctcagttgcccagccca
gtcttcccacaagagaatgacctcccacaaccaagcaaccagtgtctctccacaaacacc
aaccaccactgttcccctccacacatacacagcccctgcctcgtccccaagaaacgcact
cacatctccgaagactccgcgtgcgaggacggagagagccggtccaagcgcatccggaag
aagttcaccttcaagggcatgtatggatctccctccccctttctccccagacaggctgca
ggtagagggagccaggatgaggcacaagccagatacccctcttcccaccagccccaggcc
tcttccagccacctctctccccccacaggcggccagggggatgggggagtggtgtgctac
tattggggcgtgcctttctgtccgcgagggcaggacccagatgcctacacgcaggtgatc
atgtcccagctggaggtgtatgagaagagcctgaaggaagcccagaggggtctgctgagg
aaggcaggctggggggagcctgtccttcctggacacccagagagacctttttccaggagg
ggacgccccaagagacacagggccccagaacttctggaggaagaggaggaagaagtgcag
ggagtgaggaaccaacaggaagaggtagtggaggtggtagaggatgatggtgaggaaagg
gagtggcggcagtcacagggagggacgaaagagggagggaggagaggaagactggagtgg
aaggactatcagtcactgtttgtgtccactcctgaacaagacgaaaaatcgccctcacct
gtatttcatgtagaatccaatcaacaacaaattctacctcgaaggagtcttggccttaga
aaggaagagagaagacccctgcctgacccgctggagaaggaaaaggaagaagatgaaaat
gagggagagaagagggaggaggaagaaaggatgggggaggaagtggtggatgtcggtggc
ttagaagttccaggtataagaaatgatgagacccaactcggtgacgatggcacccaagac
ctgatggtcaccagccctgcacagccccaaccagagaggcagtccctgcctcagatccag
acttttctctcatcaccccatcctctggatcagcgtgtagaggggatggaggtggaagag
gagaggaggagtggccctgttaggagtcctgctagaggagaggatgtgagggtggaaatg
gaggagacgggggaggtacagggtggggtctcagaacctgcaccccctcagagccccagc
atggactgtcctatgtgcatgcgccccttccccctgacggagattgagctgcacgctgcc
tactgtgacggtagtactgctaacatggaggaagaggagatgatggctcagagccaatcg
caagttacagtgaagtctcataggaagaggaccagaaggggagagaaaattggagaggag
cagccctgttcttctggctctggcaaggcagtgcagggagagaagtgcttcctgtgtcag
cagctgtttcatctacgggactatgagaagcacgtagaggactgcatcagaaaccaagat
gtgtccaaggctatatccagggctggaccgagtggagacttgctgagtgctttggaccag
acagagcacagagattcagggactgctgaggccggaccatgtgatactgccttcaggagc
caacacagtggccttattgaggctctgggagagtctgggggaagtggagacatcgccgtc
ccaggtttcagagtgagcacctcgcccatccgatccttcacctccatctcagaagccaca
gactgccttattgacttcaagcgccagtactcttcctgtacttcctcctcttcctcctcc
aggcccagacaaagagggaggaaattcaataggaaattcaaatttactaaaaaatag
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