Salvelinus fontinalis (brook trout): 129818518
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Entry
129818518 CDS
T11136
Name
(RefSeq) retinoic acid receptor RXR-alpha-A-like isoform X1
KO
K08524
retinoid X receptor alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03320
PPAR signaling pathway
sfon04148
Efferocytosis
sfon04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
129818518
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
129818518
03320 PPAR signaling pathway
129818518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfon03000
]
129818518
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sfon03310
]
129818518
Transcription factors [BR:
sfon03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
129818518
Nuclear receptors [BR:
sfon03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
129818518
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NCBI-GeneID:
129818518
NCBI-ProteinID:
XP_055730477
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Position
21:26304898..26472911
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AA seq
550 aa
AA seq
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METKPFLSLGFLKPQCSLAPPPQRGRSGEACSCFTGMCHLHQRRISTGNAQRHLHIPSPS
APSWQTQHLGRHLYEINSSGQVTSSPLGSPTSHRGMHPSLLSPSSMGPSGSLHSPISNLS
SPMNGLGSPFSVISSPMGPHSMSSPGMGYGPSVSPQLNSPMNSVSSSEDIKPPLGLNGVM
KVPAQPSQGCMPLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK
DCLIDKRQRNRCQYCRYQKCLACGMKREVLLHTAVQEERQRAKERSENEVESTSSVNEDM
PVEKVLEAELAVEPKTETYIETNLGMPSNSDGRYPGLCHLRPITEMNKPNDPVTNICQAA
DKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHV
HRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEAL
REKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLM
EMLEAPHQMT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaacctttcttgtcattggggttcctgaagccccagtgctcgctggctccg
cctccccagcgaggacgctcgggggaggcctgctcctgtttcaccggcatgtgtcacctc
caccagcgccggatatctacaggtaacgctcaacgccatctccacatcccatcgccatct
gccccgtcatggcagactcagcacctgggaagacacctgtatgaaataaattcatcaggc
caggtgacctcgtctcccctgggctctcccacgtcccaccggggcatgcacccatccctg
ctcagcccgtcctccatggggccctcgggctccctgcactctcccatcagcaacctgagt
tctcccatgaacggcctgggctcgccattctctgtcatcagctcccccatgggcccacac
tccatgtcctcgcccggcatgggctacggccccagtgtcagcccccagctgaactccccg
atgaactcggtcagcagctcggaggacatcaagcccccgctgggtctcaacggggtgatg
aaggtgcccgcccagccctcacaagggtgcatgcccctctccctcaccaaacacatctgt
gccatctgcggggaccgctcgtcaggtaaacactatggagtgtacagctgtgagggctgt
aaaggcttcttcaagaggacagtgaggaaggacctgacctacacctgccgagacaacaag
gactgtctgatcgacaagcgccagcgcaaccgctgccagtactgtcgctaccagaagtgt
ctggcctgtggaatgaagagagaagttttgttacacacagccgtccaggaggagcgccag
cgggccaaagagcgcagtgagaacgaggtggagtccaccagcagcgtcaacgaggacatg
cccgtggagaaggtcctggaggcagagctcgctgtggaacccaagacagagacctacatc
gagaccaacctgggcatgccatccaactcggatgggaggtatccagggctctgccacctg
aggcctatcactgagatgaacaagcccaacgacccagtgactaacatctgccaagcagcc
gacaagcagctcttcacgctggtggagtgggccaagaggatcccccacttctctgagttg
cccctggatgaccaggtcatcctcctacgagcagggtggaacgagctcctcatcgcatcc
ttctcgcaccgttcgatagcggtgaaagatgggatcctcctggcaacaggtctccacgtc
catcgtaacagcgcccacagtgctggagtgggagccatctttgacagagtgctcacagaa
ctggtatccaagatgagagacatgcagatggacaagacagagctgggttgccttcgggct
atcgtcctcttcaacccagactctaaaggcttgtctaacccaggcgaggtggaggctttg
agagagaaggtctatgcctctctggaggcctactgcaaacagaaatacccagatcagcct
ggcaggtttgccaagctgttgctgcggttaccagccctgcgctccattggtctgaagtgt
ctggagcacctgttctttttcaagctcatcggggacacgcccattgacaccttcctcatg
gagatgctagaggcgccccaccaaatgacataa
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