Salvelinus fontinalis (brook trout): 129819020
Help
Entry
129819020 CDS
T11136
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfon03021
]
129819020 (chd1)
03036 Chromosome and associated proteins [BR:
sfon03036
]
129819020 (chd1)
Transcription machinery [BR:
sfon03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
129819020 (chd1)
Chromosome and associated proteins [BR:
sfon03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
129819020 (chd1)
SLIK complex
129819020 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
129819020
NCBI-ProteinID:
XP_055731484
LinkDB
All DBs
Position
21:complement(46179909..46220256)
Genome browser
AA seq
1800 aa
AA seq
DB search
MAGRSEDEGVSNSSGESSNSDDESGSGSGSGSSSSSSSSSSSGSGSGSGSDSGSQSDSDS
GKSKEKNEPENKAKIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQQSSSNSGSDSSSS
EDSDDDSSGKRRKSGSGSSSGSGSGSGSGSGSDSSAQEQEHSEESDDYEPSHKVKSRKLP
TKANARNGKKSNVQRKKPSAGSSSDDDYDGKKSSSNQGPRRQATQNVSYKEDEEQKTDSD
DLVEVCGEDVPPPDEDEFETLERVMETRIGRRGATGGTTTVYAVEADGDPNANFNTNKEA
GEQQYLFKWKGWSHIHNTWETEETLKLQNVKGMKKLDNFKKKESDKKKWIKCSSPEDVEY
FNCQQELMDDLHSQYQLVERIIGHSNQKSAAGFPDYLCKWQGLSYSECSWEDGALISRKY
QKSIDDYMRRNQSKTIPSRDCKVLKQRPRFIPMKKQPSYIGGEGLQLRDYQLDSLNWMAH
SWCKGNSCILADEMGLGKTIQTISFLNYQFHEHQLYGPFLLVVPLSTLVSWQREIQLWAP
LMNVVVYLGDISSRGMIRTHEWMHVQNKRLKFNILLTTYEILLKDKGFLGNVPWAFIGVD
EAHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWEIFEEE
HGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYKWILTRNY
KALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDSEFYNKQEALQHLIRSSGKLVLLD
KLLLRLRERGHRVLIFSQMVRMLDILAEYLKSRQFLFQRLDGSIKGEMRKQALDHFNAEG
SEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIYRLVT
KSSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGTAPSSATPFNKEELSAILKFGAE
ELFKEQEGEEQEPQDMDIDDILKRAETRDNDPGPSTVGEELLSQFKVANFSMMEEEEIVM
DSERHHRGWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQVNFNGSESRRSRNRR
YSGSDSDSVSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARD
AELVDKSEHDLKRLAETVHNGCLKTLRENPCGPEKTSGGRRGKVKGPTFRISGVQVNAKL
VISHEEELAPLHKAIPADPDERKRYTIPCHSKAAHFDIDWGKEDDSSLLIGIYEYGYGSW
EMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQRQAGTANWRK
RKPRSKKTKAVKPAKVDEVVKSPSSTPHSDKSSEDEIEEEKEVVPVKLPLRRGRAERVVV
KEEPEPEEEPEPPEEKEPKEREMKKEVKKEKKEESREVKEKDLKEKKETKPVDPVHEQEE
VTGEKPSEVKTEVREKVKKTSDTPVHITAGGENISEESEELDQKTFSVCKERMRPVKAAL
KQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTEF
DARKLHKLYKHAIKKRQENAQAADGITSTVNTHGFKHADIERLKDNSHHDDSSRDSYSSE
RHHSSSRYHEDRDSRDRHTSDPYSRMSGSGGDSRKRPYSSFSNGKDHRDHYRSDRQDSRY
YSDSKHRKVDEHRSGRDGRMDSKERSHSDHRSHSEHHSGSDYSSGHHKSSSRGDSYRYHA
DWQMDQRASASGPRSPRDQRSPRDQRSPYDGRSPLGHRSPFEYSSDHKSTPEQIWSSRKT
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgaagtgaagacgagggtgtgagcaacagcagtggagagtcaagcaactcg
gacgatgagtccgggtcgggctctggatcaggctccagctccagttccagctccagtagc
agctcaggaagcggctcaggaagcggctcagactccggcagccagtccgattccgactct
gggaaatccaaggagaagaacgaaccagaaaacaaagccaagatcgacggagccgagttc
tggaagtccaaccccagtatcctagcggttcaaaggtcagctatgctcaggaaacagcaa
ctccagcagcaacaacaacaacagagctcttcaaacagtggatcggattcgtcgagcagt
gaggattcagatgacgactcgagtggaaagagaagaaaatcgggttctggatcgtcctcc
gggtctgggtcgggttctggaagtggttccggttctgactcgtcagcacaggaacaggag
cacagtgaagagtcggatgattacgagcccagtcataaagtcaaaagcaggaagcttcca
accaaggccaacgccagaaacgggaagaagagcaatgtgcagaggaaaaagccctctgcg
ggctcatcctcggacgacgactatgacggcaagaagtcgtcgtcgaaccaggggcccagg
cgccaggccacgcagaacgtcagctacaaggaggacgaggagcagaagactgactctgac
gacctggtggaggtgtgcggggaggatgtgcctccgccagacgaggatgagtttgagacc
ctggagcgcgtgatggagacgcggatagggaggagaggagcgacgggaggcaccaccaca
gtgtacgcagtggaggcggacggagaccccaacgccaacttcaacaccaacaaggaggcg
ggcgagcagcagtacctgttcaagtggaaaggctggtcccatatccacaacacctgggag
acggaggagacgctgaagctgcagaacgttaagggcatgaagaaactagacaacttcaag
aagaaggaatcggacaagaagaaatggataaaatgttcttcaccagaggatgtggaatac
tttaactgtcaacaggaactcatggacgacttacactcacaatatcagctggtggagagg
ataattgggcattcaaatcagaagtcggcggcgggttttccggactacctgtgcaagtgg
cagggcctgtcgtactcagagtgcagctgggaggacggagccctcatctccagaaagtac
cagaagagcatagatgactatatgcgcagaaaccagtccaagaccattccctccagagac
tgcaaggtgttgaaacagaggccaaggtttattcccatgaagaaacagccgtcctatatc
ggtggagaaggactgcagctccgagactaccagttggacagcttgaactggatggctcac
tcatggtgcaaggggaacagttgcatcctggcagacgagatgggcctgggaaaaaccatc
cagaccatctccttcctcaactaccagttccatgaacaccagctgtatggaccattcctg
ctggtggtgcccctgtccacgctcgtctcctggcagagagagatccaactgtgggccccc
ctcatgaacgtggtggtctacctgggtgacattagcagccggggcatgatcagaacacat
gaatggatgcacgttcagaacaagagactcaagtttaacatcctgctaacaacatatgaa
attctcctaaaagataagggattcctggggaacgtgccatgggccttcatcggcgtggat
gaggcccaccggctgaagaacgacgactcgctcctttataagaccatgatggacttcaag
tccaaccaccggctgctcatcaccggcacgccgctgcagaactcactcaaagagctctgg
tcattgctgcacttcatcatgcccgaaaagttccactcgtgggagatatttgaggaggaa
catgggaagggtagggactctggctacaccagtctacacaaggagctggagcccttcctg
ctgcgtagagtcaagaaggatgtggagaagtctcttcctgctaaagtggagcagatcctc
agagtggagatgagcgccattcagaagcagtactacaagtggatcttgacgaggaactac
aaggccctgagtaaaggtaccaaaggtagcacgtctggcttccttaacatcatgatggag
ctgaagaagtgctgcaaccactgctatctcatcaagccccccgaggacagcgagttctac
aacaaacaggaggccttacagcacctaatccggagcagtgggaagctggtgctgctggac
aagctgctgctgcgtctgcgggagcgtggccaccgtgtgctcatcttctctcagatggtc
cggatgctggacatcctggccgagtacctgaagagccgccagttcctcttccagagattg
gacggctccatcaagggagagatgaggaaacaggcgctggaccatttcaacgctgagggc
tctgaggatttctgcttcttgttgtcaacacgggcgggcggtctgggcatcaacctggcg
tcagccgacacggtggtcatatttgactcggactggaacccacagaatgacctgcaggcc
caggccagagcccacaggattggccagaagagacaggtgaacatctaccgcctggtgact
aagagctcggtggaggaggagatcattgagcgggccaagaagaagatggtgctggaccat
ctagtcatccagaggatggacaccacgggcaagacggttctccacaccggcaccgccccg
tccagtgccactccgttcaacaaggaggagctgtcggccattttgaagtttggtgctgag
gagctgttcaaggagcaggagggggaggagcaggagcctcaggatatggacatcgacgat
atcctgaagagagccgagaccagagacaatgaccccggcccctccactgttggagaggag
ctactctcacagttcaaggtggccaacttctccatgatggaggaggaggagatcgtcatg
gattctgagcgccaccatcggggctgggatgacatcatccccgaggagcagcggcggcgg
atggaggaggaggagaggcagaaagagctggaggagatctacctgctgccccgcatgagg
aactgtgccaaacaggtcaactttaacggcagtgagagccggcgtagtagaaacagacgg
tattccggctccgacagcgactccgtctcggatcgcaagaggcccaagaaacgaggacgg
cctcggaccattccacgagaaaacatcaagggcttcagcgatgctgagatacgaagattt
atcaagagctacaaaaagtttggtggaccacttgaaagactggatgctatcgcccgtgat
gccgaactagtggacaagtctgaacatgacctgaagcgtctggcggagacggttcacaac
ggctgtctgaagactctccgggagaacccctgtggaccagagaagacgtcaggaggcaga
agagggaaagtgaaaggccctacgttcaggatctcgggcgtccaggtgaacgccaagctg
gtgatctcccacgaggaggagctggctccgctccacaaagccattcctgccgaccctgat
gagaggaagaggtacacaattccatgccactccaaggcagcacactttgacattgattgg
ggcaaggaggacgactctagcctgctcataggaatctacgagtatggttacggcagctgg
gaaatgattaaaatggaccctgatctcaacctgacacacaagctcctaccagacgaccct
gacaagaagccacaggccaagcaactgcagacgagagcagactatcttatcaaattactg
agcaaggacctggccaaaaaggaagcacagaggcaagcagggacggccaattggcggaag
aggaaaccgaggagtaagaagaccaaagctgtgaagccagccaaggtggacgaagtggtg
aagagtccgtcctctacgccccactcagacaagtcctcagaggacgagattgaggaggaa
aaggaggtggtcccggtaaagctgccactcagaaggggccgagcggaacgcgtggtggtg
aaggaggagcctgagccagaggaggagccggagccgcctgaggagaaggagcccaaagaa
agggagatgaaaaaagaggttaaaaaggagaagaaagaagagagccgcgaggtgaaagag
aaggacctgaaagagaagaaagaaaccaagcccgtggatccagtacatgaacaggaagag
gtcacaggggagaagccgagcgaggtgaagactgaggtacgggagaaggtgaagaaaact
tcagacactccggtccacatcacagcagggggagagaacatctcggaggagtcggaggaa
ctggaccagaagaccttcagtgtgtgtaaggagaggatgcgaccggtcaaggcggccctg
aagcagctggaccgtccggagaagggcctgtcggaacgcgagcagctggagcacacgcgc
cagtgcctcatcaagatcggagaccacatcacagagtgtctgaaggagtactccaacccc
gagcagatcaaacagtggagaaaaaacctgtggatatttgtttcaaaatttacagaattt
gatgcaagaaaattgcataaactgtataagcacgcaatcaagaaaagacaagagaatgct
caggcagcagatgggatcactagcactgtaaatacccatggctttaaacatgcagacatc
gagaggctaaaagacaactctcaccacgacgacagcagcagggacagctacagctctgaa
aggcaccactcgtcgtcgcgctaccacgaggaccgcgacagtcgggacaggcacacctcc
gacccctacagcaggatgtcggggagcgggggggactccaggaagagaccctactcgtcc
ttcagcaacggcaaagaccacagagaccactacaggtcagaccggcaggacagcagatac
tacagcgacagtaagcacaggaaggtggacgagcaccggtcaggccgagacggacggatg
gacagcaaggagcgctcccactctgaccaccgctcccattccgaacaccactcgggctcc
gactactcatcgggccaccacaagtcgtcatcgcgaggtgactcttaccgctaccatgca
gactggcagatggaccaacgggcatcggccagcggtccccgttcgccgcgtgaccaacgc
tcgccacgcgaccaacgctcgccctacgacggacgctcgccgttaggccaccggtcgccc
ttcgagtactcgtcagaccacaagagcacgccagagcagatctggagcagccgcaagaca
taa
DBGET
integrated database retrieval system
