Salvelinus fontinalis (brook trout): 129819555
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Entry
129819555 CDS
T11136
Symbol
exosc7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129819555 (exosc7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129819555 (exosc7)
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129819555 (exosc7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
129819555 (exosc7)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129819555
NCBI-ProteinID:
XP_055731882
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Position
22:3309485..3317030
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AA seq
291 aa
AA seq
DB search
MATVQVSEAEKVYILHGVRDDLRVDGRGCEDYRHMEIETEMVSNTDGSAKVTLGHTDVLV
GVKAEMGKPRPMVPDKGYLEFFVDCSANATPEFEGRGGDELGMELSNTLYKVFNNRYSVD
LKSLCISPGEHCWVLYVDVLLLQCDGNLFDAISVAIKAALFNTKIPKVHISEDEEGGKEI
ELSDDPYDCMRLNVENVPCIVTLCKVGHRHVVDATLQEKACSVASLIISVTHKGTVTCVR
KVGGGSLDPESIFEMTETGKRVGKALHAPLMELLQEEESLGKKRQKVGFLG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggctactgtacaagtcagtgaggctgaaaaggtgtatattttgcatggtgtacgggat
gacttacgggttgatggacgaggatgcgaggactacagacacatggagattgagacagaa
atggtgtcaaatacagatggctcagccaaagtgacactggggcatacagacgtgctagtg
ggagtcaaagctgaaatgggaaagccaaggcccatggtcccagataaaggctacctggag
ttttttgttgattgctctgccaatgccacaccagaatttgagggtcggggtggtgatgag
ctgggcatggagttgagcaacaccctctacaaagtgttcaacaacagatacagtgtggac
ctgaaaagcctctgcatcagcccaggggaacactgctgggtgctctatgtggacgtgctg
ctcctgcaatgtgatggaaatctttttgatgccatctctgttgccattaaagcagctctc
ttcaatacaaaaattcccaaagtgcacatctctgaggatgaggaaggagggaaggaaata
gagctgtcagacgacccctatgactgcatgcgactcaatgtggagaacgttccctgcatc
gtgaccttgtgcaaggtgggccataggcacgtggtggacgccacgctgcaggagaaggcg
tgttcggtggccagcctgatcatctctgtcacacacaaggggacggtcacctgtgtcagg
aaggtggggggaggcagcctggacccagagagcatctttgagatgacagagacagggaaa
cgggtagggaaagccctccacgccccactcatggagcttctgcaggaggaggagagtctg
ggaaagaagagacagaaagtgggctttcttggttag
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