Salvelinus fontinalis (brook trout): 129819619
Help
Entry
129819619 CDS
T11136
Name
(RefSeq) SKI2 subunit of superkiller complex protein-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129819619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129819619
Enzymes [BR:
sfon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129819619
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129819619
mRNA degradation factors
3'-5' decay
Ski complex
129819619
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
HTH_23
DUF3516
Motif
Other DBs
NCBI-GeneID:
129819619
NCBI-ProteinID:
XP_055731989
LinkDB
All DBs
Position
22:complement(5540007..5586240)
Genome browser
AA seq
1250 aa
AA seq
DB search
MERIDLPPVGPTDLPLSLLEMGCSGRFELITHPQPNDQPLYPQSTLPHGLPPTSVGLETE
VEKRFLRDPAWLPIHDTDTAFHRFLKLAERDVRVDSLLHCSLSPLHSGISVVRDPTTGIL
LDFTEVLLGDTGISAKNSMSLQRPPNPNPSESLRGSNTNYPFLPGGMDELTLEQIKTKSE
LEEDIDFENGLLTVPPGLKVGMDFSDKDAKTTKGEINLLSLLSTFDDIVDSQPEAEEKEK
GLGSRDSPKLPRTNSLEDLGIKDSPSTPGTTSTEKKDGGMTKPGEGHEEKKRWAIPVDIT
SPCDDFYKRIPNPAFKYPFELDMFQKQAVLRLEAHESVFVAAHTSAGKTVVAEYAIALSQ
KHMTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPEASCLIMTTEILRSMLYNG
SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWIGRI
KKKHIYVISTAKRPVPLEHYLYTGNSTKTQKEMFLLLDPTGNFQTKGYYSAIDAKKERTS
KHAQSFGTKNASQKTTPNQDRAVWLSLLHFLSQRQQTPVVAFTFSRTRCDDNARSLTSMD
LTSSGEKSEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGIAVHHSGILPILKEVIEML
FSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLD
ATGTVIILCKSGVHDMGELHVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSF
SESHRDTQAHEQQIGQLKRTLSSLPPLDTEGQLSDLLPYYYTVTELRITAEALQCAVLGS
VNGLKALSVGRVVVVNNKQHFNALGVLLQVSSDSVNRTFTALVICEKGNEEGGGDSPNAS
AFPHLYNTALFLPEGPCSHTVQKLKLQDVSAITVKTLKVIPDRIIDNYNKRQQPRFRLDP
PGQAISTATQELLRLAEANPGGVVTLDAVNDLQLKSVDVVEGTMRLRVLQDSLKDFNCIH
SPTFSEQFLLVQERMSVQEELDKLLFLISDQSLSLLPEYHQRIKVLQSLQYVDNSGAVQL
KGRVACQISSHELLLTELLFENALSPLAPEESAALLSCLVFQQKTQVEPHITNTLQEGIE
RVLAVAQRIGELQRDCGLTQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTV
VRCIQRLDEVLKEVRHAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaatagatcttccccctgtgggccccacagatctcccgctatccctgctggag
atgggttgctctggcaggtttgagctcatcacacatccacagcccaatgaccagcccctg
tatccacaaagcacgctcccccatggactccctcccaccagtgtgggcctggagacagag
gtagagaagcgcttcctacgcgaccctgcctggcttcccatacacgataccgacactgcc
ttccacaggtttctgaagctggctgagcgagacgttcgtgtggactctcttctccattgc
tctttgtctcctctacactctggcatctcagtagtcagagatccaacgacaggaatactt
ttggacttcactgaggtgttactgggggacacaggcatctctgctaagaattctatgtcc
ctgcagcgtccaccaaaccctaatccctctgagagcctccgaggaagcaacaccaactac
ccctttctgcccggtggtatggacgagctgacactggagcaaatcaagacgaaatccgag
ctggaggaagacatagactttgagaacgggttactcacagtgccccctggacttaaagtt
gggatggacttcagtgacaaagatgccaaaaccacaaagggagaaatcaacctcctgtcc
ctcctgtccacctttgatgacatcgtagactcccagcccgaggcagaggagaaagagaaa
ggactcggaagcagagattctcccaaactacccagaaccaacagcctggaagacctgggg
atcaaggactctccctctacacctgggaccacctcgacagagaagaaagatggaggaatg
accaaaccgggagagggccacgaggagaagaagagatgggctatcccagtagacatcacc
tccccttgcgatgacttctacaaacgcatccccaaccctgccttcaagtatccctttgag
ttggacatgttccagaagcaggcagtgttgaggctggaggcacatgagtctgtgtttgtg
gcagctcacacatcagcaggcaaaaccgtggtggcagagtatgccatagcactctcacaa
aaacacatgaccaggaccatctacacctcccccatcaaggcgctgtccaatcagaagttc
cgggacttcaagaccacctttggggatgtggggctgctgactggggatgtccagctgagt
cctgaagcctcctgtctcatcatgaccactgagatattgaggtccatgctctataacggt
tcagaggtcatcagagatttagagtgggtgatctttgatgaggttcactacatcaatgat
gctgagagaggagtggtgtgggaggaggttctgatcatgttacccgaccacgtcagcatt
attctgctgagtgccactgtccccaacgctgtggagtttagtgagtggatagggcgcatt
aagaagaagcacatctatgtgatcagcacagcgaagagacctgtgcctctggagcactac
ctgtacacaggcaacagcaccaagacccagaaagagatgttcctactgttggacccaaca
ggcaacttccaaaccaaagggtactattctgcaatagatgccaaaaaggaacgtaccagt
aaacacgcccagtcctttgggacgaaaaatgcatctcagaagactacacccaaccaggac
cgggcggtgtggctttccctcctccacttcctgtcccagcgccagcagacccccgtggtg
gcgttcaccttctccaggacgcgctgcgacgacaacgcccgctctctaacctccatggac
ctcaccagctcgggggagaagagcgagatccactccttcttccagaagagcctgagccgc
ctcaggggaggggaccgccagctgccccagatcctgttgatgagggacctgctgaagagg
gggatcgccgtgcatcacagcggcatcctgccaatcctaaaggaggtcattgagatgctg
ttctcacgggggctagtaaaggttctgtttgccactgagacgtttgctatgggagtgaat
atgcccgcgaggacagttgtgtttgacagcatacggaaacacgatggtaccggcttcaga
aacctgctgcctggtgagtatatccagatggctggtagagctggtaggagaggtctagat
gccacgggcactgtcatcatcctctgcaagtcaggggtacatgatatgggagaactacat
gtcatgatgctggggaagcccacagtgctgcagtcccagttcaggctaacctacaccatg
attctcaacctgctgcgtgtggaggccctccgagtcaccgacatgatgaggaggagcttc
tctgagagccacagagacacacaggcccatgagcagcagataggtcagttgaaacggact
ctgtcctctctccctcctctggacacggagggtcagctgtctgacctactgccgtactac
tacactgtcactgagctacgcatcaccgctgaggcgctgcagtgtgcagttctgggctcc
gtgaatgggttgaaggctctctccgtgggacgagtggtagtggtcaacaacaaacagcac
ttcaacgcccttggagtcctcctacaggtgtccagcgactcagtgaatcgtacgtttacc
gctctcgtcatttgtgagaaaggcaacgaggagggaggaggggacagccccaacgccagt
gccttcccccacctctacaacactgccctctttctacctgagggtccctgcagtcacacg
gtccagaagctgaagctacaggacgtgtcagccatcacagtcaagaccctgaaggtgatc
cctgaccgaatcatcgacaactataacaagaggcagcagccgcgcttcaggctagatcct
ccgggccaagccatctccacggcaacccaagagctcctgcgattggcggaggccaaccca
ggcggggtggtgacccttgacgcggtgaatgacctccagctgaagagtgtggatgtggtg
gagggcaccatgaggctgcgcgtgctgcaggacagcctcaaagacttcaactgcatccac
tcacccaccttctcagaacagtttctgctggtgcaggagaggatgagtgttcaggaggag
ctggacaaactgctcttcctcatctcagatcagtccctgtctctactgccagagtaccac
cagagaatcaaggtgctccagtccctgcagtacgtggacaatagcggtgctgtgcagctg
aagggcagggtggcctgccagatcagtagccatgagctgctcctcacagagctactgttt
gagaacgccctgagtcccctggcccctgaggagagcgccgccctgctgtcctgtctggtc
tttcaacagaagacccaggtggagccccacatcaccaacacactgcaggagggtattgag
agagtgctggcggtggcccagcgtattggggaactgcagagggactgtgggttaacccag
acagctgaagaatttgtgggccagttcaagtttggcctgaccgaagtggtatactgctgg
gccagaggcatgccatttgctgagattgcgcagttaacagacgtccaggagggcacggtg
gtgcgctgcatccagagactagacgaggtgctgaaggaggtgcgccatgcagcacgcatc
gtgggagactcggtcttgggcagcaagatggagaaggcctccctggccattcgcagagac
atcgtgttcactgcttcgctctacacacactga
DBGET
integrated database retrieval system
