Salvelinus fontinalis (brook trout): 129819773
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Entry
129819773 CDS
T11136
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sfon00535
]
129819773
Proteoglycans [BR:
sfon00535
]
Extracellular matrix (ECM) proteoglycans
Others
129819773
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
Fn3_nematode
DUF4959
VWA_3
DUF4992
Motif
Other DBs
NCBI-GeneID:
129819773
NCBI-ProteinID:
XP_055732320
LinkDB
All DBs
Position
22:complement(10407209..10492059)
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AA seq
1905 aa
AA seq
DB search
MPATGLKTWVWNPLLCLALISLSPAPAQGQVATPRRLRFKVLSATQLHVSWKEPKGDFES
YRFIYSTQSDAEETELEVTKKEAKVIIDFDPRKLYTVKVTALKGARESKPLLGTFEAQLS
EPDVKNVQPQNVQPKNQKDTSVTEENNEISEEQFMCKTPAIADIVILVDGSWSIGRINFR
LVRMFLENLVSAFHVEFDKTRIGLAQYSGDPRIEWHLNTFTTKEAVIDAVKNLPYKGGNT
LTGLALTYILENSYKPESGSRAGVPKIGILITDGKSQDDVQPPARSLREAGIELFAIGVK
NADEKELKAIGSPPEETHVYNVADFSAMSSIVEGLTRTVCDRVEQLDKAIKGDTGPEVTM
AAPRDLVTSEVTARSFRVSWTHSPGTVEKYRVVFYPASGGQPEEKVVQGTVDTVVLNYLL
SLTEYQVAVFAIYARSASEALRGSTTTLALPMVNNLELFDITHNSMRARWRVAEGASGYM
ILYAPLTEGDAADEKEVKVAETVNEVELENLTPDTEYTVTVYAMYGEEASDPMTSQETTL
PLTPARNLRFSDVDHSSARLTWEATSKKANGYRIMYVKTNGVQTNEMDVGRITTLLLRNL
TSLTEYTVAIFAIYDEGQAEPLTDSFTTKTVPEPLNLKTSEVSTESFRVTWEHSAQDVVL
YRLTWTPTRGGDTKEMLVNGNRNSHLLTGLRPITEYEVSLIAVFRNEEESDAVTLTESTV
ARTTTTTKATTTTTTTRATTTAVVHLGVRNLLLSDHTTFSMEVSWEMQDRNVRQYRVAYV
TARGDRAEETKMVPGGQNSLLLQPLLSDTEYKVTVTPVYADGDGPGVSRMGRTLPLSAPR
NLRVSEEWYNRFRITWDTPPSPTMGYRVVYKPISAPGPALETFVGEDVNTMLILNLMSGT
EYGVRVIASYTTGSSEALTGKARTLYLGVTNLNTYQVRMNSMCAQWSAHRHATLYRVVIE
SLLNGHKQEARLGGGATRHCFNDLTANTQYKISVYAQLQDTEGPAVTTTERTFPVPTPAP
TRPPTTTPPPTIPSTKEVCKAAKADLAFLVDGSWSIGDESFLKIIRFLYSTTGALDTIGP
DGTQVAIVQFSDDARTEFKLNSYDNKERLLEAINRISYKGGNTKTGLAIRHVKDTIFTVG
GGIRRGIPKVVVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSER
HVFFVDDLDAFKKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVEGMYGHVS
GVSMEPGTFNSFPCFRLHNNSLLAQPTKFIHPEGLPSDYTITILFRLLPETPKEPFALWE
ILNKDNEPLVGVILDNGGKTLTFFNHDYKGQFQTVTFEGPEIKKLFYGSFHKLHLAISKT
NAKAVIDCKLVGEKAINAAGNITTDGLEVLGRMVRSRGKKDNSAPFQLQSFDIVCSTSWA
SRDKCCELPGLRKEEDCPAMPRACTCTQDSKGPPGPTGPPGGPGIRGGRGDRGEPGAVGP
IGPVGDAGTPGLQGPPGPQGPSGRTIMGPPGGPGERGEKGAAGAPGIQGIPGSPGSPGRE
GQTGTRGLPGKDGPQGRTGPTGTMGTPGAPGSPGSSGPPGSLGDQGPPGSAGNKGEKGER
GDLQSQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPVSVRTIPGPPGEPGRQGGQGP
QGEQGPAGRPGFPGSNGENGQPGARGLSGEKGDKGSPGVGVQGPRGPVGPPGPTGQGRTG
SQGPSGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGEGGNGGDPSDHRNLPLV
QLPPNVYQNYDEAEEEDPYRYDAGGYPSEYYQPNYPAPRPVEPEDPALTQGDEVLRSPGI
HRSSRSLAEEEKEKKEEEGPEERKMVGPMRESRLRRVLRKSGTHN
NT seq
5718 nt
NT seq
+upstream
nt +downstream
nt
atgccggctacaggactgaagacgtgggtatggaatcctctactctgtctggctcttatc
tctctctcacctgcaccagctcagggtcaagttgccactccacgaagacttcgtttcaaa
gtcctgagcgcaacccagctgcatgtgtcatggaaagagccgaaaggagactttgaaagc
tacagatttatttatagcacacaatcagatgcagaggagactgaactagaggtgacaaag
aaggaagccaaagtgatcatagactttgaccccagaaagttgtacacagtcaaggtcact
gctctgaaaggtgctcgggagagcaagccacttctaggaacatttgaggcccaactttca
gagcctgacgttaagaacgtacagccccagaatgtacaacccaagaaccagaaagacacc
agtgtcacagaggagaacaatgagatatctgaagagcagttcatgtgtaagaccccggcc
atagcggatattgtgatcctggtggacggatcatggagtatcggacggataaacttccgt
ctggtccgcatgttcctggagaatctggttagcgccttccatgtggagtttgacaagaca
cggataggtctggcccagtatagtggtgaccccaggattgagtggcacctgaacactttc
accaccaaagaagcagtcatcgacgctgtgaagaaccttccctacaaaggagggaacaca
ctgacgggtcttgcattgacatacatccttgagaacagttacaaacccgagtccggatcc
agggccggcgttcccaaaattggaatcctgatcacagatgggaagtctcaagacgatgtc
caacccccggcgcggagtctgagagaggcgggaatagagctgtttgccattggtgtgaag
aacgccgatgagaaagagctgaaggccattggctcgcctccagaggagacgcacgtctac
aacgtggctgacttcagcgccatgagctccatcgtggagggtctgaccaggaccgtctgt
gaccgggtcgaacagctcgacaaggccatcaaaggcgacacaggcccagaagtcaccatg
gctgctcccagagacctagtgacctcagaagtgacggccaggagtttccgggtgtcgtgg
acccactcccctggcacggtggagaagtaccgggtggtgttctaccctgccagcgggggc
cagcccgaggagaaggtggtgcagggcacagtggacacagtggtgctcaactacctcctc
tccctgactgagtaccaggtggccgtgttcgccatctacgccagatcagctagcgaggcc
ctccgaggcagcactaccacattggccctacccatggtgaacaacctggagctgtttgac
atcacccacaatagcatgagagcccgctggagggtcgcagagggggcttctggctacatg
atcctctatgccccactgaccgagggagacgccgccgacgagaaggaggtgaaagtggct
gagactgtgaacgaagtggaactggagaacctgactccagacacagagtacacagtgacc
gtgtacgccatgtatggagaggaggccagtgaccctatgaccagtcaggagaccacgcta
cccctgaccccggcgcggaacctccgcttctctgacgtcgaccacagctcggccaggctc
acctgggaggcgacgtccaagaaggccaacggctaccgcatcatgtacgtcaagacaaac
ggagtgcagaccaatgagatggatgttggccgcatcaccaccctgttgctgaggaacctg
acgtcattgacagagtacacggtggccatctttgctatctatgacgagggccaggcagag
ccccttactgacagcttcaccactaagacagtcccagagcctctgaacctaaagaccagt
gaagtctccactgagagcttcagggtcacctgggaacactcagcccaagacgtggtcctc
tacagactcacctggaccccaaccagaggaggagacactaaagagatgctagtgaatggt
aacaggaacagccacctgctgactggactgaggcccatcactgagtacgaagtctctctg
attgctgtctttagaaacgaggaggaaagcgacgccgtgaccctcacagagtcaacagtg
gcaagaacaacgactaccacaaaagctactacaaccacgactaccacacgagctaccacc
acagcagttgtgcatctgggtgtgaggaacctcctgcttagtgatcacaccaccttcagc
atggaggtgtcctgggagatgcaggaccgcaatgtgcgtcagtaccgcgtcgcctatgtc
accgccaggggcgatcgtgccgaggagacgaaaatggtccccggtggtcagaacagcctg
ctgctgcagccactgctgtctgacacggagtacaaggtgacggtcaccccggtctacgcc
gacggagacggccccggtgtcagccgcatgggacgcaccttgccgctgtctgctcctagg
aacctgagagtgtcggaggaatggtacaaccgcttccgtatcacctgggacacgccccca
tccccaactatgggctacagggtcgtctacaaacccatctctgctccgggacctgctctg
gagacctttgtgggcgaggacgtgaacaccatgctgatcctgaacctgatgagcggtaca
gagtacggcgtcagggtcatcgcctcctacaccaccggctccagcgaggccctcactggc
aaggccaggacattatacctgggagtgaccaatctgaacacctaccaggtgaggatgaac
agcatgtgtgcccagtggagtgcccaccgccacgccactctgtaccgtgtggtcatcgag
tcgctgctcaatggacataaacaggaggcaaggctgggaggaggagccacccggcactgc
ttcaatgacctgacagctaacacgcagtacaaaatcagtgtgtacgcccaacttcaggac
acagagggacctgcagtcaccaccacagagagaaccttccctgttcccaccccggcaccc
accagaccgcccactaccacccctcctcccaccataccctcaaccaaggaagtttgcaag
gcagccaaggcagacctggcgttcctagtggatggctcctggagcatcggggatgaaagc
ttcctgaaaatcatccgcttcctgtacagcaccacaggagccctcgacaccattggacca
gatggcactcaggtggccattgtccagtttagtgacgatgctagaaccgagttcaaactc
aactcctacgacaacaaggagaggctactagaggccattaaccgcatctcctacaaggga
gggaacaccaagacagggctagccatccggcatgtgaaagacaccatcttcacggtgggg
ggagggatccggaggggcatccccaaagtagtggtggtgttgactgacgggcgctctcag
gacgatgtcaacaaggtctccaaagagatgcagatggaagggtacattgtctttgccatt
ggttttgcggatgcggactacggggagctggtgagcatcgccagcaagcccagcgagaga
cacgttttctttgtggacgatttagacgccttcaagaaaattgaggaaaagctggtcacc
tttgtttgtgaggctgccactgccacttgtccttcggtggcgatgagtggcagtaccttg
ccaggtttcaggatgatggagatgtttggcctggtggagggtatgtatggacatgtatca
ggagtgtccatggagcctggcaccttcaacagcttcccctgcttccgcctgcacaacaac
tccctcctcgcccagcccaccaagtttatccaccctgagggcttgccttccgattacacc
atcaccatactgttccgcctactgcctgaaacccccaaagagccctttgcattgtgggag
atcctcaacaaggacaacgagcccctggtgggcgtcatcctggacaacggtggcaagacc
ctcaccttcttcaaccacgactacaaaggacagtttcagactgtgaccttcgagggacct
gagatcaagaagctcttctacggcagtttccacaagctgcacctggctattagcaagacc
aacgccaaggctgtcatcgactgtaagctggtgggggagaaggccatcaacgcggcgggc
aacatcaccacagatggcctggaggtgctgggacgaatggtgcgctcccgggggaagaag
gacaactctgcaccgtttcaactgcagtcgtttgacatcgtctgcagcacgtcctgggcc
agccgagacaagtgctgtgagcttcctggtctgaggaaggaggaggactgtcccgccatg
ccccgtgcctgcacctgcacacaggacagcaaaggcccccccggccccactggaccccct
ggaggtcctgggatcagaggagggagaggggaccgtggagaaccaggagctgtggggccg
ataggtccagttggggacgctggtactcctgggctgcaggggcctcctggcccccagggc
cccagcggccgcaccatcatgggccccccgggtggtccaggagagagaggtgagaagggt
gcagctggcgctccaggaatacagggcattcctggatctcctgggtcaccaggtcgagaa
ggacaaacaggaacaaggggactgcctggtaaagatggaccccaggggcgaacaggacct
acagggactatgggcactccaggagctcccggctcaccagggtcaagtggacctccaggg
tcactgggagaccaaggacctcctggttccgctggaaacaaaggagagaagggagaaaga
ggtgacctgcaatcccaggcatcggtccaagcaatcgcccggcaggtctgtgagcagctg
atacagagtcacatggctcgctacagctccatcctcaaccacatccccagtgcacccgtt
tcggtccgcaccattcctggacccccaggagagcccgggcggcagggcggccaaggacca
cagggagagcaggggcccgcgggcagaccagggttccccgggtccaacggagagaatgga
caaccaggagccagaggtttgtcaggagagaagggtgacaagggaagcccaggtgtagga
gtccagggtcccagaggccccgtaggacccccaggaccaacgggtcaggggcggacaggt
agccagggtccatctggtcggccggggaaccctggaactcctgggcggccgggtatccct
ggaccagtggggtcggctggacctcctggatactgtgaccagaactcttgcgtgggctac
aacgtaggagagggtggcaacggtggtgacccatctgaccaccgcaatcttcccttagtc
caattgccccccaacgtctaccagaactatgacgaggcggaggaggaggacccctatagg
tacgacgcggggggctacccctccgagtactatcagcccaactacccggcgccccgacca
gtcgagcccgaggacccagccctgacccagggcgacgaggtgctgaggtcccccgggatc
caccgctcctccaggagcctggctgaagaggagaaggaaaagaaagaggaagaggggccg
gaggagaggaaaatggttggtcccatgagggagagcaggctaaggagagtcttgaggaag
tcagggacacacaactga
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