Salvelinus fontinalis (brook trout): 129819924
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Entry
129819924 CDS
T11136
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
129819924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfon03021
]
129819924
03036 Chromosome and associated proteins [BR:
sfon03036
]
129819924
Transcription machinery [BR:
sfon03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
129819924
Chromosome and associated proteins [BR:
sfon03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
129819924
PBAF complex
129819924
GBAF(ncBAF) complex
129819924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Omp_AT
DUF919
Motif
Other DBs
NCBI-GeneID:
129819924
NCBI-ProteinID:
XP_055732600
LinkDB
All DBs
Position
22:14882627..14909387
Genome browser
AA seq
978 aa
AA seq
DB search
MATTSGGPNIGTPGTSQSPHTTMAQRKKDGSPSARYWESHDSLVQLETVRQWIGKHYKKY
VQADSPSCQALASLALQLLQFQEEVFGRRAEIRTHTKLPSRCFLDLRPGGGLCHILGSAY
KFKTDQGWRRFDLQNSSRTDRNVEMFTTLEKTLVQNSCLSRPVVYVDQEVDQNLNSRLAD
IVAKHQGSLTEDRTQASHHIYPRPAVTDQDWEWVRPVMRKDNYVLVHWGRHPDSYDSWLS
SSDVEGEVQEPPHTHRPWRVHAGWVLDTEVYNEWMNEEDYLVDDRNVPLILRRRVHVTDQ
QDRKFTPVKKRRRSPSPPSSDGKKKGGKKSGGFKRRGPKEEEEEVEEDLTKDMEDPTPVP
NMEEIILPKNVNPKKDSENTPVKGGMMTDLDEIEDDSLLPGGREDEEGREGLRLSDGEDN
ITEQTHHIIVPSYTAWFNYNCIHQIEKRALPEFFNGQNKSKSPEIYLAYRNFMIDSYRLN
PQEYLSSTSCRRNLTGDVCAVMRVHALLEQWGLVNYQVDAESRPLPMGPPPTPHFNTLAD
TPSGLAPLQHRPLQVSSSQQMLFFPERSVEKPSDSQNFGLRTDLYARKHPKSKGTSSGRD
WTEQETLLLLEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSASSLGPLA
YQPVPFSQSENPVMSTVAFLASVVDPRVASAAAKAALEEFCRVREEADKVLEFPALNEAE
KADVMDGEKMETDSGSQQPLQVDRQTVLEPSGGERSVEGERVKRENAEMTVTEERDGDSG
GNLETDRGEKDEIAGRWREVERDEGRRLAELELVDGTVTTAAAAALGAAATKAKHLAAVE
ERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQSFHSEQLK
HAEMKILQQREQQAPYTPQHTGQSMPSQMMPTGGNSLTMAPRHPGAPNGMYPPAQPDGIA
PTQPGPPSTAIHSRGAET
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaacgtcagggggacccaacatcgggactcccgggaccagccagagtccacac
accactatggcacagcggaaaaaagacgggagtccgtccgcgaggtactgggagagccac
gactccctggttcagctcgagacggtgcgacagtggatcgggaagcattacaaaaagtat
gtgcaggcagactctccatcctgccaggctctagcctccctcgcccttcagctgcttcag
ttccaggaggaagtgttcggcagacgggccgaaatccgcacacacaccaaactaccttct
cggtgcttcctggacctgcgcccaggaggcgggctttgccacatccttggctctgcctac
aagttcaagactgatcaaggctggagaaggtttgacctacagaactcctccaggacggac
cgtaacgtagagatgtttactactctagagaagaccctggtccagaatagctgtctgtcg
aggcccgtcgtgtatgtggaccaggaggtggatcagaacctgaacagcagactggctgac
atcgtcgccaaacaccagggttcgttgactgaggacagaacccaagcctctcaccacatc
tacccccgtccagctgtcacagaccaagattgggagtgggtgcgccctgtcatgcggaag
gacaactatgtgttggtgcactggggcaggcaccctgacagctacgatagctggctgtcc
tccagtgacgtagagggagaggtgcaggaacctccacacacacacagaccttggagggtg
cacgcaggctgggtgttggatacagaggtgtataatgagtggatgaacgaagaagactac
ctggtagatgacagaaacgttcctctcatcctccgccggagagtccatgtcacagaccaa
caggaccgtaagtttactccagtgaagaagagaagacgctccccctctcctccctcttcc
gatggcaaaaagaaaggaggaaagaagagtggtgggtttaagaggcgtgggccaaaggag
gaagaggaagaggtagaggaggatctgactaaagatatggaggatccaacacctgtccct
aatatggaagaaattatactgcctaagaatgtgaacccaaagaaggacagtgagaacact
cctgtcaaaggagggatgatgactgacctggatgaaattgaggatgactctctgcttcct
ggtggaagggaggatgaggagggcagagaggggctgcgtctgtcagatggagaagacaac
atcacagaacaaactcaccacatcatcgtcccgtcctacaccgcctggttcaactataac
tgtattcaccagatcgagaaacgagctcttccagagttctttaacggacagaacaagtcc
aaatctccagagatatacctggcgtatcgtaacttcatgattgactcgtaccggctgaac
ccccaggagtacctcagctccacctcctgcagacggaacctgacaggagacgtatgcgcc
gtcatgagggtccatgcgttgttggagcagtgggggttagtgaactaccaggtggatgca
gaaagcagacctctccctatgggaccccctcccacccctcacttcaacacactggctgat
acaccctcaggactggccccgctgcagcacagaccactacaggtgtcgtcctcccagcag
atgttattcttccctgagagaagtgtagagaagccctcagactctcagaactttggcctc
agaacagacctgtatgccaggaaacaccccaagagtaaaggaaccagttcagggagggat
tggacagaacaggagaccctcctactgttggaggcgttagaggtctatagagacgactgg
aacaaggtgtcagaacacgtggggtctcgtacccaggacgagtgcatcctccacttcctg
cgcctgccaatagaagacccttatctggaggactccgcctcctctcttggcccattggcc
taccagcccgttcctttcagccaatcagagaatccggtgatgagcaccgtggcgttcttg
gcatccgtggttgatccccgagttgcctccgccgctgccaaggctgctctggaggagttt
tgtcgtgtgcgtgaggaagctgacaaggttctggagttccctgcactcaatgaggctgag
aaggcagatgtgatggatggtgagaagatggagactgactctggctcccagcagcctcta
caggtggatagacagacggttctagagcccagtggaggagagcgatcagtggagggagaa
cgagttaagagagagaatgctgaaatgacagtcacagaggagagagacggcgatagcgga
gggaacctcgagacagaccgaggggagaaggatgagattgcgggacgatggagggaagta
gagcgggatgaagggaggagactagcagagctggagttggtagatgggacagttaccacg
gcagcagcagctgctctaggcgccgccgctactaaggccaagcacctagcagcggtagag
gagaggaagatcaagtctctggtggctctgctggtggagactcagatgaagaagctggag
atcaaactgagacactttgaggagctggagaccatcatggaccgagagaaagaggctttg
gagcaacagcgtcagcagctgttgtcagagcgacagagtttccactctgagcagctgaaa
catgcagagatgaagattctacagcagagagagcagcaagcaccatacactccacaacac
acaggtcagtccatgcccagccagatgatgcctactgggggaaactctctcaccatggcc
cctcgacaccctggagctcccaacggcatgtacccaccagcacagcctgatgggatagct
ccgacgcagcctggtcctccaagcacagccatacacagccggggagcagaaacatga
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