Salvelinus fontinalis (brook trout): 129820276
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Entry
129820276 CDS
T11136
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03013
Nucleocytoplasmic transport
sfon03015
mRNA surveillance pathway
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129820276 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
129820276 (ddx39b)
03015 mRNA surveillance pathway
129820276 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129820276 (ddx39b)
03041 Spliceosome [BR:
sfon03041
]
129820276 (ddx39b)
Enzymes [BR:
sfon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129820276 (ddx39b)
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129820276 (ddx39b)
Spliceosome [BR:
sfon03041
]
Complex C
Other components
EJC/TREX
129820276 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129820276 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
129820276
NCBI-ProteinID:
XP_055733312
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All DBs
Position
22:complement(36953798..36975803)
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AA seq
428 aa
AA seq
DB search
MTEQDVENELLDYEEEDVVGDLSGGDILSIKKERVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPTIKVAVFFGGLSIKKDEEVLKKECPHVVVGTPGRILALI
RNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRLTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
VALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISELPDEIDI
SSYIEPTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcaggatgtggagaatgagctcttggactatgaggaggaggatgtggtggga
gatctatcaggaggggacattctgtccattaaaaaagagcgtgtgaagggttcctatgtg
tccatccattcgtctgggtttagagacttcctgttgaagcccgagctgctgagggcgata
gtggactgtggctttgagcatccctctgaggttcaacatgagtgcatccctcaggccatc
ctgggtatggatgtgctgtgccaggctaagtctggtatgggcaagacggccgtgtttgtc
ctggccaccctacagcagctggagcctgtcactggacaagtgtccgtgctggtgatgtgt
cacacccgagagctggcgtttcagatcagcaaggagtatgagagattctccaagtacatg
ccgactatcaaggtggcagtgttctttggtggcctgtctataaagaaggacgaggaggtg
ttgaagaaggagtgtccccatgtggtggtggggacgccggggcgaatcctggccctgatc
cgcaacaagaccctcaacctgcgacacatcaaacacttcatcctggacgagtgtgacaaa
atgttggaacaacttgacatgcgccgagacgtccaggagatattccgtctgaccccccac
gagaaacaggtcatgatgttcagcgccaccctgagcaaagagattcgccccgtctgccga
aagttcatgcaagatccgatggaaatctttgttgacgatgagaccaagctgactctccac
gggctgcagcagtactacgtcaaactgaaggacaacgagaagaacaggaagctctttgat
ctcctcgacgtgctggaattcaaccaggtggtgatctttgtgaagtccgtgcagcgctgt
gtggctctggcccagctgttggttgagcagaacttcccggctattgccatccaccgcggg
atgccccaggaggaacgtctctctcgttaccaacaatttaaagacttccagagacgtatc
ctggtggccaccaacctgtttggcagagggatggacatcgagagggtcaacatcgccttc
aactacgacatgccagaagactctgacacgtacctgcacagggttgccagggcgggcagg
tttggcaccaaaggcctggccatcacatttgtgtctgatgagacggatgcccgtactctt
aatgacgtccaggaccggttcgaggtgaacatcagcgagctgcctgacgagatcgacatc
tcatcttacattgaaccaacccggtaa
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