KEGG   Salvelinus fontinalis (brook trout): 129820296
Entry
129820296         CDS       T11136                                 
Symbol
hdac1
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
sfon  Salvelinus fontinalis (brook trout)
Pathway
sfon03082  ATP-dependent chromatin remodeling
sfon03083  Polycomb repressive complex
sfon04110  Cell cycle
sfon04330  Notch signaling pathway
sfon04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    129820296 (hdac1)
   03083 Polycomb repressive complex
    129820296 (hdac1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    129820296 (hdac1)
   04350 TGF-beta signaling pathway
    129820296 (hdac1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    129820296 (hdac1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sfon03036]
    129820296 (hdac1)
Enzymes [BR:sfon01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     129820296 (hdac1)
Chromosome and associated proteins [BR:sfon03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     129820296 (hdac1)
   HDAC complexes
    Sin3A-HDAC complex
     129820296 (hdac1)
    BRAF-HDAC complex
     129820296 (hdac1)
    REST complex
     129820296 (hdac1)
    SHIP complex
     129820296 (hdac1)
    MiDAC complex
     129820296 (hdac1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     129820296 (hdac1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    129820296 (hdac1)
  Chromatin remodeling factors
   NuRD complex
    129820296 (hdac1)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 129820296
NCBI-ProteinID: XP_055733337
LinkDB
Position
22:38437130..38451820
AA seq 485 aa
MALSSAGGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ANGEEMTKYHSDDYIKFLRSIRPDNMSEHSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV
AGAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH
HGDGVEEAFFTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE
AIFKPVMAKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDY
LEKIKQRLFENLRMLPHAPGVQIQAIPEDAPHPDSGDEEDEDPDKRISIRAHDKRIACEE
EFSDSEDEGQGGGGRRNAANQKKTKRVKTEEEKGETEEKKEVKEEDKEAEEKMDTTGPKE
ETKTC
NT seq 1458 nt   +upstreamnt  +downstreamnt
atggcgctgtcgtctgcaggaggaacaaagaagaaagtttgctattattatgatggtgac
gtgggtaactattactatggtcagggtcatcccatgaaaccccacaggatccgtatgacc
cacaacctgctgctcaactatggactgtacaggaagatggagatatacagaccccacaag
gccaacggagaggagatgaccaagtaccacagtgacgactacatcaagttcctgcgttcc
atccggccagacaacatgtcagaacacagcaagcagatgcagagatttaatgtgggagag
gactgcccagtgtttgacggcctgtttgagttctgtcagctttcaacgggaggctctgtc
gcgggggcagtgaagctgaacaaacagcagacggacatcgccgtcaactgggccggagga
ctccatcacgccaagaagtctgaggcctctgggttctgctacgtcaacgacatagtcctc
gccatcctggagctgctcaagtaccaccagagggtgttgtacatagacatcgacattcac
catggagacggagtggaagaggctttcttcaccacagaccgggtcatgactgtctccttc
cacaagtatggagaatacttccctggtacaggagacctgagggacattggagcagggaag
gggaagtactatgctgtaaactaccctctcagagacggcatcgacgacgagtcttatgaa
gccatcttcaaacctgtgatggctaaagtgatggagatgttccaacccagtgctgtagtg
ttacagtgtggagcggactctctctcaggagacagactgggctgcttcaaccttaccatc
aaaggtcatgctaagtgtgttgagtacatgaagagtttcaacctgcctctgttgatgttg
ggaggtggaggttataccatccgtaacgtggcccgctgctggacctacgagaccgccgtg
gctctggacagcaccatacctaacgagctgccgtacaacgactactttgagtactttggc
cctgacttcaagctccacatcagcccgtctaacatgaccaaccagaacaccaatgattac
ctggagaagatcaaacagaggttgtttgagaacctgcgcatgctgccccacgccccggga
gtccagatacaggccatcccagaagacgctccacacccggactctggagacgaggaggac
gaggaccctgacaaacgcatctccatcagggcccatgataagaggatagcctgtgaagaa
gagttctctgactctgaggatgagggacagggaggagggggaaggaggaatgctgccaac
cagaagaagaccaaacgagtcaagactgaggaggagaaaggggagacggaggagaagaaa
gaagtgaaagaggaggataaagaggccgaagagaagatggacacaacagggccaaaagaa
gaaactaagacgtgttga

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