Salvelinus fontinalis (brook trout): 129821326
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Entry
129821326 CDS
T11136
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03440
Homologous recombination
sfon03450
Non-homologous end-joining
sfon04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129821326 (rad50)
03450 Non-homologous end-joining
129821326 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
129821326 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfon03032
]
129821326 (rad50)
03400 DNA repair and recombination proteins [BR:
sfon03400
]
129821326 (rad50)
DNA replication proteins [BR:
sfon03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
129821326 (rad50)
DNA repair and recombination proteins [BR:
sfon03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
129821326 (rad50)
BRCA1-C complex
129821326 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
129821326 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rad50_zn_hook
AAA_21
AAA_23
AAA_15
SbcC_Walker_B
SMC_N
ABC_tran
AAA_29
AAA_22
AAA_16
AAA_13
Motif
Other DBs
NCBI-GeneID:
129821326
NCBI-ProteinID:
XP_055734865
LinkDB
All DBs
Position
2:complement(55012484..55053032)
Genome browser
AA seq
1313 aa
AA seq
DB search
MSRIEKMSILGVRSFGVEDKDKQVISFFNPLTVLVGPNGAGKTTIIECLKYVTAGEFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFTDLNGEKVAVQRSMQATQKGKKTEFRSLEGVITR
IKHGEKVSLSSKCAELDREMISALGVSKAVLDHVIFCHQEESNWPLGEGKPLKNKFDAIF
SATRYIKVLETLRQLRLKQSNEVRECQVELKFLKLNKEKALEIRELLASKETQMASSKDA
VQKIEGQIEPLENRLFDIDENLGKVMKLDNDIKALDSRKKQMEEDNQELEEKMEQVFQGS
DEQLQEMYQNHQRTVKEKERRFTECQREMERAGRECQRLNRLQSDLLVEQGRLQLEADRH
AQNMKARDSQVRVLAAYLEMEGYDRSPFNDRQLQSFNRQVKERLDQETEAANQVMRDIQE
KEAMKQQSIDEIRDKKTGLERTMELKKDLQVKKQQELRNVKSDLHRLEGSSSRLQELETE
LTKAERELESAVQSSNVDGLKAEVLELQKDKTELDSTQRRLDREMETLNTHTTTRTQMDM
LKKDKTDKEDQVRKIKSRHNEDLVSLLGHFPKKRELEDWIHAKSKEINSTREKLAKLNKE
LASGEQNKSHITAEIRRKEQQLASYEEKMFNVCGSQDFQQDLGKLQDELEKTSKQRAMLA
GATAVYTQFISQLTEEGEPCCPVCQRIFPSEAELQDVINDMQSKLRLVPDKLKNTEQDLK
RKERRKDDMMALKPVRQSIAELQEKELPELRNRLQNVNRDIERLKGDVEEQETLLSTLMS
EEDTAKACLQDISLMDRYQLDLKDVERKIAQQAAKLQGVDLSRTIQQVNQEKQETQHRLD
TMSSKMELKRKLIQDQQEQIQSLKSSMNETRAEKLQISSNMQKQQQLEEQCVEFTTEIQA
LHREIKEAKEQVSPLATTLEKLQQERLDLMERRKQRQEEGQEKINSIKDKVKSMAAYERE
ITRYTEEGKDDYKEQKEGELQETNTQVHEAEKQREKINKDSGNIRQDIDTQKVQERWLQD
NLTLRKRIEELKDVTKKREAVAKDMGNMQVLQLRNERRESEQRVDDLKKNRSVALGRQKG
FEEEIIRFRKELREDQYGKADERFRDRMIVMRTTELANKDLDIYYKALDQTIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSGAGVKRRTYNYRVVMVKGDTALDMRG
RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQ
RNFQLLIITHDEDFVELLGRSNYVEHFYRIRKNMDQCSEITKCSVSSLTSYLH
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaattgagaagatgagcatcctcggtgtgaggagctttggagtggaagacaaa
gacaaacaagtcatatcattctttaatcccttgactgtgttagtgggacccaatggtgct
ggtaaaacgactatcattgagtgtctgaagtatgtaacagctggtgaatttcccccagga
agcaaagggaatacatttgttcatgatcctaaggatgctcatgagactgacgtgcgagct
cagatccgactgcagttcaccgatctaaatggagagaaggtggcagttcaaaggtccatg
caggcaacgcagaagggcaagaagactgagttcagaagtctggagggggtcatcaccagg
atcaagcatggagagaaggtgagcctgagctccaaatgtgcagagctggacagagagatg
atctcagcgctgggtgtgtccaaagctgtcctcgaccatgtcatcttttgtcaccaagag
gagtccaactggcccctgggagaagggaagcccctcaagaacaaatttgatgctatcttc
tcagctacaaggtacatcaaggtgctggagacgctgaggcagctgaggctcaagcagtct
aacgaggtgagagagtgccaggtggagctgaagttcctgaagctgaacaaggagaaagcc
ctcgagatcagggagctgcttgccagcaaggagacccagatggcctcctccaaagatgcc
gtacagaagatagagggccagatcgaacccctggagaaccggctgtttgacattgatgag
aatctgggaaaagtgatgaagctcgacaacgacatcaaggctttagacagccggaagaag
cagatggaggaagacaaccaggaactggaggagaaaatggagcaggtgttccagggctca
gatgagcagctgcaggagatgtaccaaaatcaccagaggacagtgaaggagaaggagagg
aggttcacagagtgccagagggagatggaacgagccgggagagagtgccagagactcaac
cgcctccagtccgaccttctagttgaacaaggtcgtctccagctggaggctgatcgccat
gcccagaacatgaaggctcgtgactcccaggtgagagtcctggcagcctatctggagatg
gaaggctacgaccggtcccccttcaatgacagacagctgcagagcttcaaccgccaggtc
aaagagagactcgaccaggagactgaggccgccaaccaggtcatgagggatatacaagag
aaggaggccatgaagcagcagagcatcgatgagatacgagacaaaaagactggtctggag
aggaccatggagctgaagaaagacctgcaggttaagaagcagcaggagctgaggaacgtc
aagtctgacctgcatagactggagggctcctcctcccggctgcaggaactggagaccgag
ctcaccaaagcggagcgtgagctggagagcgcggtgcagagctccaatgtggatgggctg
aaggccgaggtgctggagctccagaaggacaaaactgagctggacagcacacagcgccgg
ctggaccgtgaaatggagacccttaacacacacaccaccacacgcacacagatggacatg
ctcaagaaggataagacagataaagaagatcaggtgaggaagatcaagtcgaggcacaat
gaggatctggtgtccctgctgggtcacttccctaagaagagggagctggaggactggatc
cacgccaagtccaaagagatcaactccaccagggaaaaactggccaagctcaataaggag
ctggcgtcgggggagcagaataaaagccacatcacagcagagatcaggaggaaggagcag
cagctggccagctatgaggagaagatgttcaacgtgtgtggcagtcaggacttccagcag
gacctgggcaagctgcaggacgagctggagaagacctccaagcagagagccatgctggcg
ggggccacagccgtgtacactcagttcatcagtcagctgacagaggagggcgagccctgt
tgccccgtgtgccagcgcatcttcccctcggaggctgagctccaggacgtcatcaacgac
atgcagtccaagctgcgcctggtccccgacaagctgaagaacaccgagcaggacctgaag
aggaaggagaggaggaaggacgacatgatggctctcaaacctgtcaggcagtctattgct
gagctgcaggagaaggagcttcctgagctgaggaaccggctgcagaacgtgaaccgggac
attgagaggctgaagggggatgtggaggagcaggagaccctgctgtccactctgatgtca
gaggaggacacagccaaggcctgcctgcaggacatctccctcatggacagataccagctg
gacctgaaggatgtggagaggaagatagcccagcaagctgccaagctgcagggagtggac
ctgagccgcaccattcagcaggtcaaccaggagaaacaggagacccagcaccgcctggac
acaatgtccagcaagatggagctgaagcgtaaactgatccaggaccagcaggagcagatc
cagagcctgaagagcagcatgaacgagacccgggcggagaaactgcagatctccagtaac
atgcagaagcagcagcagctggaggagcagtgtgtggagttcaccactgagattcaggct
ctgcacagagagatcaaggaagctaaggagcaggtgtcccctctggccaccaccttggag
aagctgcagcaggagaggctggatttgatggagcgcaggaagcagaggcaggaggaggga
caggagaagataaatagcatcaaagacaaagttaaaagcatggccgcctatgaaagagag
attaccagatacacagaagagggcaaggatgattacaaagagcaaaaagagggggagctc
caagagaccaacactcaggtccatgaggcagagaagcaacgggagaagattaacaaagac
agtggaaacatcaggcaggacatagacactcagaaggtccaagagcgttggctgcaggac
aacctgacgttgaggaagcgcatcgaggagctgaaggacgtgaccaagaaacgagaggct
gtggcgaaggatatggggaacatgcaggtcctgcagctacgcaatgagcgcagggagtct
gagcagcgcgtggacgacctgaagaagaaccgcagcgtagcactgggtcgacagaagggc
ttcgaggaggagatcatccgcttccgcaaggagctccgcgaggaccagtacggcaaggct
gacgaacgcttccgggacaggatgatcgtcatgaggaccacagagctggccaacaaggac
cttgacatctactacaaggccctggaccaaaccataatgaagtttcacagtatgaagatg
gaggagatcaacaaaatcatccgggacctctggcgcagcacataccgaggacaagacatt
gagtatgtggagatccgctctgatgtggatgagaattcttcaggggcgggagtgaagagg
aggacctataactaccgtgtggtaatggtgaagggagacacggcgctggacatgaggggt
cgctgcagtgccggccagaaggtcctggcctccctcatcatccgtctggctctggctgag
accttctgtctgaactgtggcatcctggccctggacgagcccacaaccaacctagacagg
gagaacatcgagtccctcgcacacgccctcgtagaaatcatcaagagccgctcgcgccag
cgcaacttccagctgctcatcatcacccacgacgaggactttgtggagctcctggggcgc
tccaactacgtggaacacttctaccgtatcaggaagaacatggaccagtgctctgagatc
accaagtgcagcgtctcctccctcacctcctacctgcactaa
DBGET
integrated database retrieval system
