Salvelinus fontinalis (brook trout): 129821708
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Entry
129821708 CDS
T11136
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04382
Cornified envelope formation
sfon04510
Focal adhesion
sfon04512
ECM-receptor interaction
sfon04518
Integrin signaling
sfon04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129821708 (col4a4)
04518 Integrin signaling
129821708 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129821708 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129821708 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
129821708 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfon04147
]
129821708 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
sfon00536
]
129821708 (col4a4)
Exosome [BR:
sfon04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129821708 (col4a4)
Glycosaminoglycan binding proteins [BR:
sfon00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129821708 (col4a4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129821708
NCBI-ProteinID:
XP_055735261
LinkDB
All DBs
Position
24:complement(160001..331419)
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AA seq
1666 aa
AA seq
DB search
MTVSTCCTTWTKLPLWWLVIMVVAEQTVMGGEHPEGPCGGRDCSTCQCFPAKGAQGVPGV
LGRQGPQGPPGFPGPQGPLGEKGYRGEEGFPGVSGPKGDVGTAGVPGYPGLDGVPGHPGP
GGVPGLPGLDGCNGTRGDAGFPGIHGLDGPDGGAGFPGIKGVQGDPTVQFIQYSGIPGDV
GRVGVTGLPGFQGISGPRGPTGPVGLDGSNGLTGSPGLRGPPGEKGRSLPGQKGDEGDQG
TQGPPGPFEFVDPPEDFYIKGSQGRRGVKGECGPRGSDGFDSLTGIKGEKGIIGFPGVRG
LPGYPGFPGPPGVKGILGSPGLPGLIGTEGPKGFQGDLGPKGQTEFRPVNYTGIPGELGL
PGRPGPPGDVGEMGMHGRQGLPGVSIPGTNGEPGPMGITGTKGFKGETGIYYQNGPTPGE
PGKPGTAGLNGLKGERGPPGTYCTPGSPGEPGADGDQGPPGSAGFPGSRGSDGDCDCELL
PPSKGDPGIVGIPGLPGLPGLCGAPGPRGDIGFPGDIGRSGADGFPGFAGVRGPKGQKGD
IYLCIKGVKGDIGLPGPAGRPGFTGRRGDEGKPGAPGDAGPEGDSYSGFPGERGYPGPDG
PKGLAGPVGPPGPDVIGAVGERGLPGDQGPPGYRGSPGLKGVMGDTLPCIPSNPGAPGQK
GDSGCPGLNGESGPPGYLGALGPDGVKGEKGDFGLSGPPGPIGSVGCVGDSGEAGAEGLS
YDGAAGSPGFRGSPGLKGPFGDSVPGAPGPMGLKGVVGLSGPKGVPGPPGPIGLTGAAGL
PGTPGRKGEQGESGATGRYGAPGLTPEQCEKGPPGLQGSMGLIGDIGPPGYAGEKGDNGE
EGLSGTGPKGAAGKPGSPGFLGYRGAQGPVGTLGDPGIPGAQGQKGIIGVPGRDGTVGGP
GRSGALGPLGRKGERGFDGQRGLPGDEGLKGEKGRKGAPGVAGVTNFIPIKGRTGAPGPP
GLDGFTGPRGDKGQAGGRGQPGYPGLLGGPGIEASQGPPGTPGHSGEPGLPGLPGQRGII
GFPGEIGDQGESGCTGSPGTPGFPGYSGLKGEQGDSIGIPGPAGDRGATGDTGAFAPPGD
QGDVGEPGFSGAPGPKGLTGPQGSIGPPGPAGVIGPPGPSGKPGADGLPGTPGQTGPKGD
QGPLGLKGPPGPLGLHGLDGLKGVKGEVGARGPGVPGPSGVPGCKGEKGSRGCQGPQGPS
QPGPLGPKGQSGLTGSPGDTGASGLPGMDCQESMPGHCGESGFPGRDGPPGSPGDIGYSG
PALPMTGEEGDNGVPGLPGLKGDTGASGPPGLPGIAGLPGPKGERGASGMMGVPGHSGST
GTCGPAGPKGTKGLQGVAGPKGENGNVITPMMIPPPPGPIGAPGQPGLPGFTGGPGSNGF
EGQKGRSGQLGSPGFSGPDGPPGVDGAPGDSGVQGERGALGLQGAPGPSGDAGSPGPTTT
FNSGFLLVMHSQSDMVPSCPADMTQLWIGYSLLYLEGQEKAHTQDLGQAGSCMRLFSTMP
FSYCNMGTCDYASRNDKSYWLSTTAAVPMMPVADQDIQQHISRCVVCEAPSPAVAVHSQD
NGNSFCPPNWRSLWVGYSFLMHTGAGDEGGGQSLTSSGSCLRDFRAQPFVECQGPRGTCH
YFANIYSFWLTRVGADGPLSPTSQGTLKEEWQQRLNVGRCNVCMKE
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgacggtctctacctgctgcaccacctggaccaaactccctctctggtggcttgtgata
atggtcgttgctgaacagaccgtaatggggggggaacatccggagggaccctgtgggggg
cgggactgttccacctgtcagtgtttccctgccaaaggagcccagggtgttcccggagtt
ttaggacgacaagggcctcaggggccaccagggttcccgggcccccaggggcctctagga
gagaagggatatcgaggagaggagggcttccctggcgtatctggaccgaagggagatgtg
ggtactgctggcgtaccaggatatcctggactagatggtgtcccgggtcaccctgggccg
gggggtgttcctggtctaccagggcttgatggctgtaacgggaccagaggggacgctggt
ttccctggaatccatggtctggacgggcctgatgggggagcgggtttcccagggatcaaa
ggtgtgcaaggggaccccaccgttcagttcatccagtactctggtatacctggtgatgtc
ggccgtgttggggttactggactgcctggcttccaaggcattagcggccctaggggacct
actggaccagttggtttggatggatcaaatggtttaactggttcacctggtctgagaggt
ccacctggagaaaaaggaagatcattgccaggacagaaaggagatgaaggagaccagggt
acccaaggacccccaggaccctttgagtttgtggaccccccagaagacttctacatcaaa
ggaagccaggggaggagaggtgtgaagggagagtgtggaccaaggggaagtgatggattc
gactcgttgacaggaataaaaggagaaaagggaatcatcggatttcctggagtcaggggt
cttcctggatatcctggcttccctgggccacctggtgtaaaggggattctcgggagccct
ggcctacctggtctgataggaacagagggacccaaggggttccaaggagatctaggtccc
aaaggacagacagagttcaggccggtaaattatacagggattccaggggagttggggctg
cctggaagaccaggaccccctggagatgttggggagatggggatgcacggccgccaagga
ctgcctggggtatcaatacctggtaccaatggtgagcctggcccaatggggatcactggc
accaaggggtttaaaggagagacagggatatactaccagaacgggcctacacctggagag
cctggtaaaccgggcacagcaggcctcaatggtctgaaaggagagcgcggccccccaggt
acgtactgcacccctggttcaccaggagagcctggagcagatggagatcaaggtcctcct
ggatctgcagggttccctggtagcagaggaagtgatggtgattgtgattgtgagcttctc
ccgccttcaaagggagaccctggcatcgtggggattccgggattgccagggttaccagga
ctttgtggggcaccaggcccgaggggcgacattggttttcccggagacataggaagaagt
ggggcagacggcttcccaggatttgcaggtgtccggggtccaaaaggtcagaaaggtgac
atctatctatgcattaaaggtgtgaagggagacattggcctcccagggccggctggtcgt
ccaggcttcactgggaggaggggagacgaagggaagccaggtgcgcctggtgacgccggc
ccagagggtgacagttactcaggattccctggtgagagagggtatccaggtcctgacggg
ccaaaggggcttgctggacccgtcggccccccaggacctgatgtgattggggcagtgggg
gaacggggactcccaggcgaccagggacctccaggatacaggggatctcctgggctcaaa
ggagtcatgggtgacaccctaccctgcatacccagtaaccctggtgccccaggacagaaa
ggcgattccggatgcccagggctgaacggagagtcaggacccccagggtatcttggagct
ttgggcccggacggggtgaagggagagaaaggagactttgggctgtctggcccacctgga
cccataggctcagtggggtgtgttggagactctggagaggctggtgctgagggtctgagc
tacgacggcgctgccggctctcctggcttccgagggtctccaggactgaagggcccattt
ggggactctgtccctggtgctccaggacctatgggcctcaagggtgtagtggggctgtcg
gggcccaaaggagtgccaggtccacccggtccaatcggattaacaggtgctgcggggctt
cctggtacaccgggaaggaagggggagcagggagagagtggtgccacaggcagatatggg
gccccagggctcacccctgaacagtgtgaaaaggggcccccaggccttcaaggatccatg
ggactaataggggacataggccctccaggttacgcaggcgagaagggtgataacggagag
gagggtctgtccggcacgggtcctaaaggagctgcagggaaaccgggctctccagggttt
cttgggtaccgtggagcccagggccccgtggggacattaggggaccctggcatacccggg
gcccaagggcagaaaggtataataggggtacctggtagggatgggacagtgggtggtcca
gggaggagtggagcactaggacccctgggaaggaaaggagagaggggcttcgacggtcaa
cgaggcttaccaggagatgagggcctcaaaggagaaaagggtagaaaaggtgcccccgga
gtcgcaggagtcaccaacttcattcctatcaaaggacgaacaggggctccaggaccccca
ggtctggatggcttcactggtccaagaggtgacaagggtcaagcgggaggcaggggtcaa
ccagggtacccagggcttttgggggggcctggcatagaggcgtctcaaggaccacctggt
acacctggacactcaggtgaacctggactacctggcctgcctggccagaggggtatcata
ggtttccctggagagattggtgatcagggtgaatctgggtgtactggatctcctggcaca
cctggcttcccagggtacagtggtcttaaaggtgaacagggcgactccattggcatccct
ggaccggctggtgatagaggagctacaggagacactggagcatttgccccaccgggtgac
caaggtgatgtaggtgaaccaggattttcaggagctccaggacctaaagggttaactggt
ccgcaaggatccatcggacctccagggcctgctggtgtgatcggacccccaggcccgagt
ggtaaacctggggctgatggtctcccagggacccctggacaaactgggcccaagggagat
caaggaccccttggactcaaaggtccacctggaccactgggtttgcatggactggacgga
ctgaagggtgtgaagggtgaggttggggccagaggcccaggtgtgcccggtccctctggt
gttccaggctgtaaaggagagaaaggttccagagggtgtcaagggcctcaggggccctct
cagccaggacctctgggccccaagggccagtctggactaacaggaagcccaggagacaca
ggtgcctccggtctaccaggcatggactgtcaggagtccatgcccggccactgtggggag
tcaggcttccctggacgcgacggaccaccaggttcaccaggtgacattgggtactccggc
cctgccctgcccatgaccggtgaagaaggggacaacggtgtccccggcttaccagggctc
aaaggggacacgggggcttcaggcccccccgggctgcctggcatcgcagggttacctggg
cctaaaggtgagagaggagcttcggggatgatgggggtcccaggacactccggttccaca
ggaacatgtgggcccgcaggacccaaaggaaccaagggactgcaaggagttgcaggtcca
aaaggagaaaatgggaatgtgatcactccaatgatgatcccacctcctcccggacccata
ggcgcacccggtcaaccaggccttcctggcttcactggcggcccgggatccaacggtttt
gagggacagaaagggagaagtggccagttggggtcaccaggattctcggggcccgatggc
cccccaggagtagacggggccccaggagacagcggggtacagggggagaggggggcattg
ggactacagggcgccccaggtccttcgggagatgccggcagcccaggccccaccaccacc
tttaactctggcttcctgttggtgatgcacagccaatcagacatggtcccttcctgtcca
gcagacatgacacaactgtggattggctacagtctcctgtacctggagggccaagagaaa
gcccacacacaggacctcggtcaggccgggtcatgtatgcgtctcttcagcaccatgcct
ttctcctattgcaacatgggcacgtgtgactacgccagccgcaatgacaagtcctactgg
ctgtccaccacagcggcagtgcccatgatgcccgtggcggaccaggacatccaacaacac
atcagccgctgcgtggtgtgtgaggccccctcccctgctgtggcagttcacagccaggac
aacggcaattccttctgtccccccaactggaggagtctctgggtgggatactccttcctc
atgcacacaggggctggcgatgagggtggtggccagtctctgacatcatcaggaagctgc
ctgagggacttccgtgcccagccgtttgtggaatgccagggcccgcggggtacgtgccac
tacttcgccaacatctacagcttctggttgacccgggtgggcgcagatggaccgcttagc
ccaacttcacagggcacgctcaaagaggagtggcaacagcgcctcaacgtaggccggtgc
aacgtgtgtatgaaggagtga
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