Salvelinus fontinalis (brook trout): 129821853
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Entry
129821853 CDS
T11136
Name
(RefSeq) neuronal PAS domain-containing protein 1-like isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfon03000
]
129821853
Transcription factors [BR:
sfon03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
129821853
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GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
129821853
NCBI-ProteinID:
XP_055735523
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All DBs
Position
24:6769764..6809130
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AA seq
780 aa
AA seq
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MATMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMCTFASQGDPPWCPLLEGENHCSKVRRSSHSLA
TDMFEQHLGAHLLQSLDGFVFVVSSEGRFLYISETVSIYLGLSQVELMGSSVFDYIHPAD
HVEMAERLGIRPHLRAEAGCHVAPESASSSASTSSLAGTPEPAPSSPLSPGNEPPDRGFF
IRMKSTLTKRGLHVKSSGYKVRVIHVTGQIRCRPAMVPGSARSVRRPMGLVALAHTLPPS
TLNEVRMESQMFVFRVNMDLQVTYCENRISEYMDLSPAEVVGHTCYHFIHVEDLDNIRQS
HEDLLRKGQVVTGYYRWLQRRGGYLWVQSCATVSINHKAPHERNVIWVNYVISRTELPDT
PLDLLQLPESLRAERLKASSSPSELSPQARGPQPMKSSMCKGDPDSKLREIYNPGVQSGD
RRKRPLRSDSEGAPPETRRRLEEFRQREGSVSASSDLGSESEGEERAWEQRGDSARVKRE
EGPSKQGGETPVRGGRVHNGRAVIQHLKSVVSSPLSGPHNIKTEHEALAAGGRWTHTHTS
SHTQPPPSHTHTPCGSLNGDSPPTPIPDSSSSSEAPPKGIFTPPSPAMSPPMSGSSPLPC
EERGMLSGGRGGGPDFELLQRLAAGGAAGRVLFHPLTLGPQGPQSLYAPSTIRYAPPELP
PSHPGAEGLRSDHHKGPPAFFPHLQRLAGLPSFSGFSASDNPFNPFCMNGLRGAAGSEED
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccatgccgttcgtcagcgagggaaagtgtgtgagcgtggagtgggacttccta
cagggactactggccaaaccccccaccctgccctgtttgcagaacctgcggaaggagaag
tctcgtaatgccgctcgttcccgtcgcggcaaggagaactttgagttctttgagctggcc
aagatgctgcctctccccggggccatcaccagccagctggacaaggcgtcggtcatccgt
ctcaccatcagctacttgcacatgtgcaccttcgccagccagggagacccgccctggtgc
cccctgctggagggagagaaccactgcagcaaagtgcgacgctcctcccactctctggcc
actgacatgttcgaacagcacctgggagcacacctgttacagtctctggacggttttgtg
tttgtggtaagctcggagggacgattcctctacatatcagagactgtttccatctacctg
ggcctctcacaggtggagttgatgggcagcagtgtgtttgactacatccacccagcggac
catgtggagatggctgagcgtctgggcatcaggccccacctgagggccgaggctggctgc
cacgtggcccctgagagcgcttccagctctgcctccacatcctccctggcagggacccct
gagcctgccccctcaagccctctctctccagggaacgaaccgcctgaccgaggcttcttc
atccgtatgaagtccaccctcaccaagagaggcctccacgtcaagtcctcgggctacaag
gtcagagtgatccatgtgactgggcaaatccgctgtcgccctgccatggtgccaggctcc
gcccgctcggtgcgtcggccaatgggcttggtggcccttgcgcacacgctccctccctcc
acgctgaacgaggtgcgcatggagagccaaatgtttgtcttcagggtcaacatggacctg
caggtcacctactgcgagaacaggatctcagagtacatggacctgagcccggcagaggtg
gtgggacacacctgctaccacttcatccatgtagaagacctggataacatcagacagagc
catgaggacttgttgaggaagggtcaggtggtgaccgggtactaccgctggctccagagg
agagggggttatctgtgggtccagtcctgtgccaccgtctccatcaaccacaaagccccc
cacgaacgcaacgtcatctgggtcaactacgtcatcagtcgaacagagctcccagacact
cccctggatctgctgcagctcccagagagtctgagggcggagcgtctgaaagccagctcc
tccccttcggaactctcgccacaagcccggggtccacagccaatgaaaagctctatgtgt
aaaggtgaccctgactctaaactgagagagatctataatcccggagtccagtcaggggac
aggaggaagcgtccgctgcggtctgactctgaaggcgctcccccggaaacgcggcgtcgc
ctggaagagttccgccagagagaggggagtgtgtccgcctcctcagacctgggcagtgag
agcgagggagaggagagagcgtgggagcagaggggagacagtgcgagggtcaaacgagag
gaggggccttcgaaacaaggtggggagaccccagtgaggggcggcagggtgcacaacggc
cgtgcggtaatccagcaccttaagagtgtagtgtcctcgcctctctctggtccccacaac
atcaagactgaacatgaggcactggctgcagggggtcgctggacacacacacacacctct
tcacacacacaacccccaccctcgcacacacacaccccctgcggcagcctgaacggcgac
agtcccccgacccctatcccagactcctcctccagcagtgaagccccacccaaaggtatt
ttcaccccgccctcccctgccatgtctcctcccatgtccggctcctcccctctaccctgt
gaggagcggggaatgttgtctggaggccgggggggcgggcctgactttgagctgttgcag
agactggcagcggggggtgctgcaggacgggtgctcttccaccccctgaccctcggcccc
caggggccacagagcctgtacgcccccagtaccatccgctatgcgcccccagagctgccc
ccctctcaccccggtgctgaggggctgcgctccgaccaccacaagggacctccagccttc
ttcccccacctccagaggctggccggcctgccctccttcagtgggttctctgcctcggac
aatcccttcaaccccttctgtatgaacggactgaggggggccgcagggtccgaggaggac
tga
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