Salvelinus fontinalis (brook trout): 129821933
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Entry
129821933 CDS
T11136
Name
(RefSeq) roundabout homolog 1-like isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
129821933
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfon04515
]
129821933
Cell adhesion molecules [BR:
sfon04515
]
Immunoglobulin superfamily
ROBO family
129821933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
C2-set_2
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_5
Ig_Rha78A_N
Motif
Other DBs
NCBI-GeneID:
129821933
NCBI-ProteinID:
XP_055735659
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All DBs
Position
24:complement(12684546..12807268)
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AA seq
1515 aa
AA seq
DB search
MVAAGEPAVLECMPPRGHPEPSISWKKDGANIDDRDERITIRGGKLMITNARKSDAGKYV
CVGTNMVGERESEIAELTVLERPSFVKRPGSQVVLVDQSVEFRCEARGDPVPTVRWRKED
GDLPKGRYEIREDHTLKIRRLTSADVGSYTCVAENMVGRAEASATLTVHVPPVFVVRPRN
QVVAVGRTVTFQCEATGNPQPAIFWQREGSQNLLFSYQPPQPSSRVSVSQTGDLTITDAE
RSDVGYYSCQALNIAGSVITKALLEVTDVVSDRPPPVVRQGPTNQTVSVDGTVVLSCLAT
GKPTPTIMWRKDGVLVSTHDSRVKQLDTGALQIRYAKLGDTGMYTCIASTPSGEASWKAY
LDVQEFGVPVQPARPTDPNLIPSAPFKPEVTDVTRTSVTLSWKPNFSGATPTSYIIEAFS
HASGSSWQTLAEHVKTESYVLKGLKASAVYLFLVRAANAYGLSDPSPITDTVKTQDIPPT
SQGVDHRQIQRELGEVVIHLHNPTILSSSSVRVQWTVEQQSQYIQGYKVMYRASPEGQQR
SDWAVFEVRTPGEDSTVVPQLRKGVTYEFKVRPFFNEFQGTDSEVKTAKTLEEAPSAAPR
GVTVTESGDNGTAIVVSWQPPPEEEQNGVVQEYNIWCLGNESRYHINRTVDGSTFSLLIS
SLAPGIRYSVEVAASTGAGPGVKSDVTFFQIDSSGHVTEGVLEPENTLSQQISEVVKQPA
FIAGIGAACWIILMVFSIWLYRQRKKRSGLSTNYAGIRKVPSFTFTPTVAYQRGGEAVSS
AGRPGLLNIGESATQPWLADTWPNSCSNHNDCSMNCCTAGQGSSDSNLATYSRPADCIAN
YNNQMESKQTNLMVPEGGVYVDVDLSNKINEMKTFNSPNLKDGRFVGPGGPGGQPTPYAT
TQLIQSSILGNNINTDRDRGSGGGGGETNEKHGWKPTPVQEQKQTEMTSQLHQYNIMEQN
KLNKDHYRGGDNPMATTIPYNQAHEAHTVGSYNSSDHGSSSTSGSQGQKKGVRTPKLPKQ
STMNWADLLPPPPANPPPCRNMEEYSLSIDESYDPDMQCSLPPSRMYLQPDELEEEEMER
GPTPPVRGAASSPAAVSYSHQSTATLTPSPQEELQPMLQDTADSMVSGHERRRHAVSPPP
RPISPSHTYGYISSPLSLDTDGMEEEEEMLEEEEEEGDETDAEVAKVHHHHTHPHHPHHP
HHPQQMHTRRLLLRGLEQTPASSVGDLESSVTGSMINGWGSASEEDNASSGRSSAVSSSD
GSFFTDADFAQAVAAAAEYAGLKVAKYPNPTQGQEGGPGARKYQMTPSGHRPGSPPSTDS
NMSTANMHKRPPKKQKQHHAVGHPGLQKREAYAEDLPPPPIPPPAGLKSPTHPSKTALEA
RGMMSPKAGEGRDRRGGSGGGYRPREESDPRTSSSERRETQDRQKIPRAGKGNKQEGGST
KARQHPGPEDILPYSRPSFPTVHSPRDRDPSSSSSMSSRGSGGRRRVEGGPVARRNPNDM
GAFQPGDDDLEMVET
NT seq
4548 nt
NT seq
+upstream
nt +downstream
nt
atggtggcagcgggcgagcctgcagtcctagagtgtatgccccctcgcgggcatcctgaa
cctagcatatcctggaagaaggacggtgccaacatcgatgacagagatgaacgaatcact
atccggggaggaaagctgatgataaccaatgccagaaaaagcgatgctgggaagtatgtg
tgtgtcgggaccaacatggtgggagagagggagagtgagattgctgagctgactgtgctc
gagcgacccagctttgtgaagcgtcccggcagccaggtggtgctggtggaccagagcgtg
gagttcaggtgtgaggcccggggtgacccagttcccaccgtccgctggaggaaagaggac
ggagacctgcccaagggaagatatgagatccgtgaggaccacaccctgaagatccgtcgg
ctgacctctgcagacgtgggatcttacacctgcgtggcagagaacatggtgggcagggcg
gaggcatcggccaccctcaccgtccacgtgccccctgtgtttgtggtgcggcccaggaac
caggtggtggcggtggggaggaccgtcaccttccagtgtgaggcaacaggaaaccctcaa
cctgctatcttctggcagagagagggcagccagaacctgctcttctcctaccagcccccc
cagccgtctagccgcgtctccgtctcccagacaggggacctgactatcacagatgcagag
cgctcagacgtgggctactacagctgccaggccctcaacatcgctggctctgtcatcacc
aaggccctgctggaggtcactgacgttgtgtctgatcgcccacctccagttgtccgccag
ggtccgaccaatcagactgtctctgtggacgggacagtggttctgagttgcctagcaacg
ggtaagcccacccccaccattatgtggaggaaggacggggtgttggtgtccactcacgac
tcccgggtcaaacagctggacacgggcgcactgcagatccgctacgccaagctgggtgac
acaggcatgtacacatgcatcgcctccactcccagtggcgaggcctcgtggaaggcctac
ctggatgttcaagagtttggtgttccagtgcagccggccagacccactgaccccaacctg
atccccagcgcccccttcaaacctgaggtcactgacgtcacccgcacctctgtcactctg
tcctggaagcccaacttctcaggagccacgcccacctcctacatcatagaggcctttagt
catgcgtcaggcagcagctggcagaccctggcagaacatgtgaagactgagtcgtatgtg
ttaaagggcctgaaggccagtgctgtctatctcttcctggtccgagctgctaacgcctac
ggcctgagtgaccccagccccatcactgacaccgtcaaaacacaagatatcccccccacc
agtcagggagtggaccaccgtcagatccagagggagttaggagaggtggtcatccacctt
cacaaccccaccatcctctcctcctcctctgtcagagtgcagtggacggtggagcagcag
tctcagtacatccagggttataaggtgatgtaccgtgcctctccagagggccagcagagg
agtgactgggctgtgtttgaggtgagaaccccaggggaggacagtactgtggtgccccag
ctcaggaagggagtcacctacgagttcaaagttcgccccttcttcaacgagttccaggga
acagacagtgaggtcaagacggccaagactctggaggaagctcccagtgcagcccctcgt
ggggttactgtcacagagagcggggacaatgggactgctatcgtggtctcctggcaaccg
cctccagaggaggaacagaacggggtggtccaggagtacaatatctggtgtttggggaat
gagagcaggtaccatatcaaccgtacggtggacggctctaccttctccttgctgatctcc
agcctggctccagggatccgttacagtgtggaggtcgcagccagcactggggcaggccca
ggggtcaagtctgatgtcaccttcttccagatagactcatcggggcatgtgacggagggt
gtgttggagcctgagaacaccctgtcccagcagatcagtgaggtggtgaagcagccggcc
ttcatagcggggataggagcggcctgttggatcatcctcatggtgttcagtatctggctc
taccgacagcgtaagaagaggagtggcctcagcactaactacgcaggcatccgcaaggtg
ccatcctttaccttcactcctacagtggcgtaccagagagggggagaggctgtcagcagt
gctggaaggccaggtttgctgaacattggggagtctgctacccagccctggttggctgat
acctggcccaactcctgctccaatcacaacgactgtagcatgaactgctgcaccgcagga
cagggcagcagtgacagtaacctggctacatacagccgcccagccgactgcatcgccaac
tataacaaccagatggagagcaagcagaccaacctgatggtgcctgagggaggagtgtac
gtagacgtggacctctccaacaagatcaacgagatgaagaccttcaacagccccaacctg
aaggacggacgcttcgttgggcccggtggaccagggggacagcccaccccgtacgccacc
acacagctcattcagtcttctatcctgggaaacaacatcaacacagacagagacagaggg
agtggaggggggggaggggagacaaacgagaaacacggctggaaacccacacctgttcag
gagcagaagcaaacggaaatgacctcacagctccaccagtataacatcatggagcagaac
aagctgaacaaggaccactacagaggaggggacaatcccatggctaccaccatcccctat
aaccaggcccacgaggcccacaccgtgggctcctacaacagctctgaccatggcagcagc
agcacctccgggagtcaaggtcaaaagaagggagtgcgcacccccaaactacccaaacag
agcacaatgaactgggctgacctactgcctcctcccccggctaacccacctccctgccgc
aacatggaggagtactccctgtctatagacgagagttatgacccagatatgcagtgctcc
ctgcccccctcccgcatgtacctgcagccagacgaactggaggaggaggagatggagagg
ggtcccactccccccgtcagaggcgctgcctcgtcccccgccgcggtgtcctacagtcac
cagtccacagccaccctcaccccctcgccccaggaggagctgcagcccatgctccaagac
acagcagacagcatggtctctggacacgaacgcagacgccatgcagtgagcccccctccc
cgacccatctccccctcacacacctacggctacatctccagccccctgtccctggacaca
gacggcatggaggaggaggaggagatgttggaggaagaggaggaggaaggggatgagaca
gacgcggaggtggccaaggtgcaccaccaccacacccaccctcaccaccctcaccacccc
caccacccccagcagatgcacaccaggaggctgctgctgcggggcctggagcagacccca
gcctccagcgtgggggacctggagagctctgtgacgggctccatgatcaacggctggggt
tcagcttccgaggaggacaacgcctcatcaggacgctccagcgccgtcagctcctcagac
ggatccttcttcacagacgccgacttcgcccaggccgtggcggctgctgcggagtacgca
ggcctcaaggtggccaagtaccccaaccccacgcaaggccaggagggaggccccggagcg
cgaaagtaccaaatgaccccctcaggccaccgtcctggcagccccccgtccacagatagt
aacatgagcacggccaacatgcataagaggcctcctaagaagcagaaacagcaccatgca
gtgggccacccaggactccagaaacgagaggcctacgctgaagatctgcctcctcctccc
atcccccctccagcggggctcaagtcccccacacacccctccaagacagccctggaggcc
cgggggatgatgtctcccaaggcaggcgagggcagggacaggagagggggctcaggagga
gggtaccggccacgggaggaatcggacccccgtaccagctcctcagagcgccgggagacc
caggacagacagaagatcccccgcgcagggaaagggaacaaacaggaggggggcagcacc
aaggcacgccaacacccaggaccagaggacatcctgccctacagccgcccctccttcccc
acggtccacagtcccagagacagggaccccagctcctccagttccatgtcgtcccggggc
tcagggggccggcggagagtagagggggggcctgtggcccgcaggaaccccaacgacatg
ggggccttccagccaggagacgatgacttagagatggtggagacctga
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integrated database retrieval system
