Salvelinus fontinalis (brook trout): 129822045
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Entry
129822045 CDS
T11136
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04137
Mitophagy - animal
sfon04140
Autophagy - animal
sfon04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
129822045
04137 Mitophagy - animal
129822045
04148 Efferocytosis
129822045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfon03000
]
129822045
Transcription factors [BR:
sfon03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
129822045
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GFIT
Motif
Pfam:
PAS_11
bHLH_HIF1A
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
129822045
NCBI-ProteinID:
XP_055735882
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Position
24:16572569..16596220
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AA seq
635 aa
AA seq
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MDTKEEPVVKRSSTDQRKVRSRDAARCRRSLETELFYKLAHTLPLPRRVSADLDKAAIMR
VTLSFLRMHHLRSEDTSEERVTDGDEDTVDGFYPRALAGFILVMTEEGDMIYLGDSVSEH
LGIPQLELLGQSVYDFVHPCDQEELRDLLAPRPGVSKKKPVQQHTEMNFFLRMKSTLTSR
GRTVNIKSATWKVLHCTGHMRVCCSGEDSSPPAGSFMTVLCEPIPHPSSVEFPLDRSTFL
TRHSMDLRFTHCDGRVSELVGYEPEDLIGKSAYKFHHALDSDHVTKSLHILLSKGQVCTS
LYRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVVEQADVVFSVEQSGCGLTS
DPVSDASEETLCDSDSSSNSELSLQLKENPEDLLQLAPVSGDPIVPLTDFAELSFGLPSS
PDSAPDFPQELCTPELWTLLSPILGKLTSSPPAPALIPIEELPIEDQVEKLFAVCPDESV
QNKNQPEDVEVVDLDMLAPYISMDDDFLLSVQLPETSDSPSPEPPAATRKRSHEQDEDMP
SQLMSQDKRPRHLVSPIQHKLLLSYALLDCLEDADNTELELGPIPHRRSQLLTDRDPILG
EAQGLCDTAGTNTHHALMRDLFLSRPPDPLTSSLT
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaaagaagagcctgttgtaaaacggtcgagtacggatcagcggaaggtgcga
tcccgggatgcggcgcgctgcaggcggagtctggagacggagctgttttacaagttggct
cacaccctgcccctcccccgcagagtctccgccgacctggacaaggccgccatcatgagg
gtgacgctcagcttccttcgcatgcaccacctccgctcagaggatacgagtgaggagcgc
gtcacagatggagacgaggacacggtggatgggttttacccccgggcgttggcaggcttc
atcctggtgatgaccgaggagggggatatgatttacctgggtgacagcgtcagcgaacac
ctgggcatcccacagctggagttgctgggtcagagtgtgtatgactttgtccacccatgt
gaccaagaggagctacgggatctcctggcacctaggccaggtgtgtccaagaagaaacca
gtgcagcaacacacagagatgaacttcttccttaggatgaagagcactctgactagtaga
gggcgcactgtcaacataaagtctgccacctggaaggtgctgcactgtacaggccacatg
cgcgtgtgctgcagtggcgaggattcgtcacctcctgcaggcagcttcatgacagtgctg
tgtgagcccatcccccatccgtctagtgtggagttccccctggaccggagcacgttcctc
actcgacacagcatggacctgcgcttcacacactgcgatggcagggtgtcagagctagtg
ggatacgagccagaagatctgattggcaaatctgcttacaaattccatcatgccctggac
tcagatcatgtgaccaagagcctgcacatccttctgtccaaaggccaggtgtgcaccagt
ctataccgtttcctggctaagagtgggggcttcgtgtgggcagagacccaggctacagtc
atctacaacaacaagacctctcaaccagaggctgtggtctgtcttaactttatcctcagt
gtggtggagcaggcagatgtggtgttctcagtagagcagagtggctgtgggctgacgagt
gatcctgtctctgacgcctccgaggagaccttgtgtgacagtgacagcagcagcaattcc
gagctttctctccagctgaaggagaacccagaggacctcctccaactggcccctgtctca
ggagaccccatcgtaccactaacagactttgcggagctgtcgttcggccttccatcaagc
cctgactccgccccagatttccctcaggaactgtgcacccctgagctgtggacgctcctc
tcacccatattgggcaagctcacctcatcaccaccagcaccagcgttgatccccattgag
gagctgccaatagaggaccaggtggagaagttgtttgccgtctgtccagatgagagcgtg
cagaataaaaaccagcctgaggacgtggaagttgttgatctggacatgctggctccgtat
atctccatggatgatgatttcctgctcagcgtccagctccctgagacctctgacagcccc
tccccagagccccccgctgctaccaggaaacggagtcatgagcaggatgaagacatgccc
tcccagctgatgagtcaggacaagagaccgagacacttggtgtcccccatccagcacaaa
ctgcttctcagctacgccctgctggactgcctggaggatgcagacaacacagagttagag
ctggggccaatcccccacaggcggagccaactgctgacggacagagaccccatcctcggt
gaagcccagggactatgtgacactgcaggtacaaacacacatcatgccttgatgagggac
ctcttcttgtcccgcccacctgaccccctgacctcctctctgacttga
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