Salvelinus fontinalis (brook trout): 129822129
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Entry
129822129 CDS
T11136
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04142
Lysosome
sfon04144
Endocytosis
sfon05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
129822129
04142 Lysosome
129822129
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
129822129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfon04131
]
129822129
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfon04147
]
129822129
Membrane trafficking [BR:
sfon04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
129822129
Exosome [BR:
sfon04147
]
Exosomal proteins
Proteins found in most exosomes
129822129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
129822129
NCBI-ProteinID:
XP_055736072
LinkDB
All DBs
Position
24:21291607..21315740
Genome browser
AA seq
1686 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWMFLLRNVMRISPEQGLQFSQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPAEGPLQTRLLEMNLVHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIVN
FSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVKGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENTFY
DSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASVL
LESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYMEV
GQAAAQSGNWEDLVKFLQMARKKSRESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGNEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAILTMMS
HPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFFM
KTKQLSLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRASIDAYDNFDNITLAQGLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDVELAEELLAWFLEE
DKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDKL
DASESLRKQEEQNTESQPIVYGTPQLMLTSGPGQAVPPQPGYGGYGYPAAPTGYGQPPQP
GFGYGM
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatactacctattcgcttccaggagcacctgcagctccagaacctggggatc
aacccagctaacattggattcagcaccctgactatggagtctgataagttcatctgtata
agagagaaggtgggcgagcaggcacaggttgtcatcattgatatggccgaccccaacact
cccatccgtagacccatctctgcagatagcgccatcatgaaccctgctagcaaagttatt
gccctcaaagcggcaaaaaccctccagattttcaacattgagatgaagagcaagatgaag
gctcacaccatgactgatgacgtcactttctggaagtggatctccctcaacactgtagca
ctggtcacagacaacgccgtctaccattggagcatggagggagactcccagccagtcaaa
gtctttgacagacactccagcctagcaggctgtcaaatcatcaactaccgcactgacgcc
aaacagaaatggctgcttctcattgggatttcagcacagcaaaaccgtgtggtgggagcc
atgcagctgtactctgtggacaggaaggtgtcccagcccattgagggccacgccgccggc
ttcgcccagttcaaaatggagggtaacacagaggaatcgacactgttctgcttcgctgtc
agagggcaagctggaggaaagttacacataattgaagtgggaaccccaccaacaggcaat
cagccatttccaaagaaggcagtggacgtgttcttccctcctgaggcccagaatgacttc
cctgtagccatgcagatcagctctaagcaggatgttgtctttctcatcaccaaatatggc
tacatccacctgtatgacctggagactggcacctgtatctacatgaaccggatcagcggg
gagaccatctttgttacagccccacatgaaccaaccgctggcatcattggagtcaacagg
aaaggacaggtgttgtcagtgtgtgtggaggaggagaacatcatcccctacatcaccaac
gtgctccagaacccagacctggccctgcgcatggccgtgcgcaacaacctggccggggcc
gaggagctgttcgccagaaagttcaacaccctgttcgctgcagggaactactctgaggct
gccaaggtggcagccaatgctcccaagggtattctgcgcaccccggacaccatccgtaag
ttccaaagtgtgccggcccagccgggccagacctctccactgctgcagtactttggcatc
ctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtccta
cagcagggacgcaagcagctactggagaaatggctcaaagaggacaagctggagtgttca
gaggagctgggggacctggtgaagtcagtagaccccactctggccctcagcgtctacctc
agggccaacgtgcccaacaaggtcattcagtgcttcgctgagaccggacagttccagaaa
attgtcctctacgccaaaaaggtgggctacactccagactggatgttcctgctaaggaat
gtgatgaggatcagtccagaacaaggcctgcagttctcccagatgctggtgcaggacgag
gagccactggccgacatcacacagatcgttgacgtgtttatggagtataacctgatccag
cagtgtacctccttcctcctggacgccctgaagaacaacaggcctgctgaggggcctctg
cagacacgcctgctggagatgaatctggtccacgctccacaggtggccgatgccatcctg
ggcaaccagatgttcacccactacgaccgtgcccacgttgcccagctgtgtgagaaggct
ggcctgctgcagagggctttggagcactacaccgacctatacgatatcaaacgggctgtg
gtgcacacacacctgctcaaccctgagtggctggtgaacttctttggctccctgtcagtg
gaggactctctagagtgtcttcgggccatgctgtcggcaaacatccgtcagaacctgcag
atctgtgtccaggtggcctctaagtaccacgagcagctctccaccaactccctcaccgag
ctctttgagtccttcaagagcttcgaaggtctgttctacttcctgggttccattgttaat
ttcagccaggacccagaggtccacttcaagtacatccaggccgcctgtaagacgggacag
atcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtcaag
aacttcctcaaggaagctaagctgactgaccagctccccctgatcatcgtgtgtgaccgc
tttgactttgtccacgacctggtcctctacctgtaccgcaacaccctgcagaaatacatt
gagatctacgtgcagaaggtgaaccccagccgtctgccggtggtgattggagggctgctg
gatgtggactgtgctgaggatgtgattaagaacctgatcctggtggtgaaaggacaattc
tccactgatgaactagtggctgaggtggagaagaggaacagactgaagctgctcctgcct
tggctggaggcccgtatccatgagggctgtgaggagccagctacccacaatgccctggcc
aagatctacatcgacagcaacaacaacccagagcgcttcctgcgtgagaacaccttctac
gacagccgcgtagtgggcaagtactgtgagaagagggacccccacctggcctgcgtggcc
tacgagagaggacagtgtgaccaggagctcattaatgtgtgcaatgagaactctctgttc
aagagtctgtctcgctacctggttcgccgtaaagaccctgagctgtgggccagcgtgctg
ctggagagtaacccgttcagaagacccctcatcgaccaggttgttcagacggccctgtct
gagacacaggacccagaggaggtgtccgtcacagtcaaggccttcatgactgcagacctc
cccaacgaactcattgagctgctggagaagatcgttctggataactcggtcttcagtgaa
cacagaaacctgcagaacctgctgatcctgacagccatcaaggcggaccgtacccgtgtg
atggagtacatcaaccgcctagacaactacgacgcccccgacatcgctaacatcgccatc
agcaacgagctcttcgaggaggccttcgccatcttcaggaagtttgacgtcaacacctcc
gccgtgcaggttctgattgagcacattgggaacctggaccgggcctacgaatttgctgag
cgctgcaacgagcctccagtgtggagccagctggccaaggctcagctgcagaagggtctg
gtgaaggaagccatcgactcctacatcaaggctgatgacccctctgcctacatggaggtg
ggccaggctgcagcccagagtggtaactgggaggacctggtgaagttccttcagatggcc
cgtaagaagtcccgtgagtcttacgtggagacagagctcatcttcgccctggccaagacc
aaccgcctagctgaactggaggagttcatcaatggacccaacaacgcccacatccaacag
gtgggtgacaggtgttatgatgagaagatgtatgatgcggccaagctgctctacaacaac
gtgtccaacttcgggcggctagcgtccaccctggtccacctgggagagtaccaggccgcc
gtggacggagcccgcaaggccaacagcacccgcacctggaaagaggtgtgctttgcctgt
gtggatggaaacgagttccgcctggcacagatgtgtggcctgcatattgttgtccatgct
gatgaactggaggagctcatcaactactaccaggaccgtgcttactttgaggagctgatc
accatgctggaggcagccctgggtctggagcgggctcacatgggcatgttcaccgagctg
gccatcctctactccaagttcaaaccccagaagatgagggagcacctggagctcttctgg
tccagagtcaacattccaaaggtcctgagggctgcagagcaggcccacctgtgggcggag
ctggtcttcctctatgacaagtatgaagagtttgacaacgccatcctcaccatgatgagc
cacccctcagacgcctggaaggagggacagttcaaagacattgtcaccaaggtggccaat
gtggagttatactacaaggctatccagttctacctggagttcaaaccattgttactgaac
gacctgctcatagtgctgtcaccacgactcgaccacacccgcgcagtcaacttcttcatg
aagaccaagcagctgtcactggtcaagccgtacctgcggtcagtgcagaaccacaacaac
aagggtgtcaacgaagcacttaacaacctcttcatcacagaggaagactatgcggccctg
cgtgcctccatcgacgcctacgacaactttgacaacatcaccctggcccagggcctggag
aagcatgagctgattgagttcaggaggatcgctgcctacctcttcaaaggcaacaaccgc
tggaagcagagcgtggaactctgcaagaaggacaaactctacaaggacgccatgcagtat
gcgtctgagtcgaaagacgtggagctggctgaggagttgttggcctggttcctggaggag
gataagaaggagtgctttgccgcctgcctcttcacctgctacgacctgctgaggcctgac
gtagtgctggagacggcctggaggcacaacatcatggacttctccatgccctacttcatc
caggtcatgagggagtacctctccaaggttgatgcgattaaggaaaaggtcgacaagctt
gacgcctccgagtccctgaggaaacaggaggagcagaacacagagtcccagcccattgtt
tatggcacgccccagctcatgctcacttcaggccctggtcaggctgtgcccccccagcct
ggctatggaggctacggctacccagcagcacccaccggctacggccagcctccccagcct
ggctttggctatggcatgtga
DBGET
integrated database retrieval system
