Salvelinus fontinalis (brook trout): 129822173
Help
Entry
129822173 CDS
T11136
Symbol
ncam1b
Name
(RefSeq) neural cell adhesion molecule 1b isoform X1
KO
K06491
neural cell adhesion molecule
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
sfon04514
Cell adhesion molecule (CAM) interaction
sfon04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
129822173 (ncam1b)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
129822173 (ncam1b)
04517 IgSF CAM signaling
129822173 (ncam1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfon04131
]
129822173 (ncam1b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfon04515
]
129822173 (ncam1b)
04090 CD molecules [BR:
sfon04090
]
129822173 (ncam1b)
00536 Glycosaminoglycan binding proteins [BR:
sfon00536
]
129822173 (ncam1b)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
sfon00537
]
129822173 (ncam1b)
04091 Lectins [BR:
sfon04091
]
129822173 (ncam1b)
Membrane trafficking [BR:
sfon04131
]
Exocytosis
Tethering complex
Exocyst complex assembly proteins
129822173 (ncam1b)
Cell adhesion molecules [BR:
sfon04515
]
Immunoglobulin superfamily
NCAM1/2
129822173 (ncam1b)
CD molecules [BR:
sfon04090
]
Proteins
129822173 (ncam1b)
Glycosaminoglycan binding proteins [BR:
sfon00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
129822173 (ncam1b)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
sfon00537
]
Others
129822173 (ncam1b)
Lectins [BR:
sfon04091
]
I-type lectins (Siglecs)
129822173 (ncam1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
Ig_VEGFR-1-like_5th
fn3
V-set
FN3_DSCAM-DSCAML_C
VEGFR1-3_N_Ig-like
Ig_PDGFR_d4
C2-set_2
Pur_ac_phosph_N
Fn3_ROS1
C1-set
C2-set_3
Ig_ANOS1
Motif
Other DBs
NCBI-GeneID:
129822173
NCBI-ProteinID:
XP_055736193
LinkDB
All DBs
Position
24:22931459..23049928
Genome browser
AA seq
1283 aa
AA seq
DB search
MIHAKDIILAFLLVGSTVCLEVEITPTQGEISVGESKFFLCEVVGVAKEIDWYSPSGEKI
EPNKPEITVTRNDESSSTLTLYKAGVDSAGTYKCLATNGDESAEATVNVKFYQRIIFKNA
PSPQEFNEGDNAKIVCDVISSPPPTIIWKHKGAKIQMEKDVRFKILPNNHLQIRGIKKTD
EGSYTCEGRLMARGEIDLKIIKVIVNVLPTIRVWQSEVNATAGVGQSAMLTCAADGYPEP
MVTWARAGVLLESGDKYSFNEDGSEMTIMEVAKLDEGEYTCIAKNKAGESEQELSLRVFV
KPKITFLLNQSTSEMEEQVTLTCEASGDPTPTINWSFGLRTFTEGEQAHLNRIYQASWTR
PEQHKSLDGNVVVRSDARVSSLTLKYAKFTDAGQYLCSARNAIGVDSQPAYLEVRYAPKI
QGSVTVYTWEGNAANISCEVLAHPSDVSMLWLRDGFQLPNANVTKAKVFQSPTASYLEVT
PESENDFGSYNCTASNEMGTESKEFLLIQADVPSAPSLGEVEPFSSSARVEFQEPDATGG
VPVLRYQAEWKTVGRGSWAQRVYEVQGGVLSEVTIIGLKPETNYEVKMSAINGKGEGETS
PALVFKTEPVREPEPPKLEGTPQTKGNSLKVNWIKQDDGGSPITHYLVRYKPKRQTDWKP
EIRLPSGSEYVVLNGLEWNTEYDVFVVAENQQGKSQPGTLTFRTSPEPAAIPDIDGESAL
STGIMAGILILAFVLLLLAVDVTCYFTNKCGLIMCLCGKPGSGTKGHTLEQGKAAFIKDE
SKEPIVEVRTEDECTANHNAGGPTEPNETTPLTEPELAALALDTLSSVATISDTANTTYD
PAQDSPSSESTALTCSLSAPSTDPLSTPVTDRLPAAAPAPAPTPESNTVPLISTSDLTAT
PLLDLLEDSSPRAEDKMSATAVSATDSPKSPKKSPIPIPPRRRNSNRPAPSPPTPKSPTP
THSSTVAPRKSAPDSPSLAPSTASPTQNTRKAAPIAPDSPSPAPTAFTFPASDTSTDKPA
PTATGTVTPVPGTPTVLGSSTPAPDPDKPDSTTKDTHTPAPNLDPTTTPTSVPNIDCTTT
PTSVSSAPTTASNADVTAAIVHENTTKSALVFPDILIPTPAPTPAPNAPTALSFATPAAP
TVTITPASTTYDTPTPTLTPHIPITTEPQAPEIEFELTNGVATKSPSLPPAGPIRFQSSP
TPSPAPVPSSSFQANGDGFGADLQASGPPALEELDSLAKAAPLNNEKIFGDEKSKAEEVK
TSQSEVTAEHNDVTQTNTSDSKA
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atgatccacgcgaaggatatcattttagccttccttctcgtgggctctacagtttgtctg
gaagtggagatcacacccacccagggagagatcagtgtcggagagtccaagttctttctg
tgtgaagttgttggggtagcaaaggagattgactggtattcgccgagcggggagaagata
gagcccaacaaaccagagatcaccgtaacccgaaacgacgagtcctcgtccaccctcacg
ctctacaaggccggggtggacagcgctggaacctacaagtgtctggccaccaacggagac
gagtcagcagaagccaccgtcaacgtcaagttctaccaaagaatcatcttcaagaacgcc
ccctccccccaagagttcaatgaaggggacaacgccaaaatcgtgtgtgacgtcatcagc
tcccctccccccaccatcatctggaaacacaaaggagcgaagattcagatggagaaagat
gtccgctttaagatcctgcccaacaaccacctgcagatccgaggcatcaagaagacagac
gaggggtcgtatacctgcgagggccgcctcatggcccggggagagatcgacctcaagatc
atcaaggtcatcgtcaacgtgctccctaccatccgggtgtggcagtcggaggtgaatgcc
acagcaggcgtgggccagtctgccatgttgacctgtgcagctgatggatacccagagcca
atggtgacctgggcaagggccggtgttcttctggagtcaggagacaagtacagctttaat
gaggacggttcagagatgaccatcatggaggtggccaagctggatgagggagagtacacc
tgcatcgctaagaacaaggctggggagagcgaacaggaactcagcctcagggtgtttgtg
aaacctaagatcaccttcctgctgaatcagagcacgtctgagatggaggagcaggtgact
ctgacctgtgaggcgtcaggggaccccacccccaccatcaactggagcttcggcctgcgc
accttcactgagggagagcaggcacatcttaacaggatctatcaggcctcttggactcgg
cccgagcaacacaagagtctggatgggaacgtcgtagtgaggagtgatgctcgtgtgtcc
tccctcacgctgaagtacgccaagttcaccgacgctggccagtacctctgctctgcacgc
aacgccatcggagtggattctcaacccgcctacctggaagtccgctatgcccctaagatc
cagggctcagtgacagtgtatacctgggagggaaatgcagctaacatcagctgtgaggtc
ctggcccaccccagtgacgtgtccatgctgtggctgagggacgggtttcagcttcccaac
gctaacgtcaccaaagccaaggttttccagagccccacagccagctacctggaggtcacc
ccagagtctgagaatgactttgggagctacaactgtactgcttccaatgagatgggcaca
gaatccaaggagttcctcctcattcaggctgatgtcccgtcagccccgtcactcggggag
gtggagccgttctccagctcagccagggtggagttccaggagcctgatgccaccgggggt
gtacctgtcctcaggtaccaggctgaatggaagactgtgggcaggggcagctgggcgcag
agggtctatgaggtccaaggaggagttctgagtgaagttaccatcataggcctgaagcct
gagaccaactatgaggtgaagatgtcagccatcaacggcaagggagagggtgaaactagc
cccgctctggtcttcaagacagagcctgtccgggaacctgaaccgcctaagctggaggga
acaccccaaaccaaaggcaactccctcaaagtcaactggatcaagcaggacgatggaggc
tcacccatcacacactacctagtccgctataaaccaaagcgtcagaccgactggaagcca
gagatccggctgcccagtggcagtgagtatgtggttctgaatggacttgagtggaacacg
gagtacgatgtgtttgtggtggcagagaaccagcaggggaagtcccaacctggaaccctg
accttcagaacctctccagaacccgctgccatcccagatatagacggtgagtctgccctg
tccacgggcatcatggcagggatcctcatcttggccttcgtcctgctgctcctggctgtg
gacgtcacctgctacttcaccaacaagtgtggcctcatcatgtgtctgtgtggcaagcca
ggcagcgggaccaagggacacaccctagaacagggcaaggctgcattcataaaggacgag
tccaaagagccgatagtggaagtgaggacagaggatgagtgcacagccaatcacaatgca
ggtggacccacagaacccaatgagaccacaccccttacagagccagagctggctgccctg
gctctggacaccctctcgtctgtagccaccatctctgacacagccaacacaacctatgac
cccgcccaggacagcccctctagcgagagcaccgcactcacctgtagcctgtctgccccc
tctactgaccccctatctacccctgttactgaccgcctgcctgccgctgcccccgccccg
gcaccaaccccagagtccaacacagtcccccttatctccacctctgacctcacagcaacc
cccctgttagaccttctagaagacagctctcctagagcagaggacaaaatgtctgccact
gctgttagtgccacagatagccctaaatctcctaaaaagtcccctattccaataccacct
agacgtcgaaactctaacagacctgctccttctcctcccactcccaagagccccacacct
acccactcctccaccgtggcccccaggaaatctgccccagacagtccctctcttgccccc
tccactgcctctcctacccaaaacaccaggaaagctgctcctattgccccagacagcccc
tctcctgctcctacggcattcactttcccagcctctgacacctccaccgataaacctgca
cctactgccaccggcactgttacccctgtccctggtacccctactgtcctgggctctagt
acaccagcccctgaccccgacaaacctgactctactaccaaagacactcacactcctgcc
cctaatttagaccccactaccactcccacatctgtccctaatatagactgcactaccact
cccacatctgtctctagtgctcctactactgcctccaatgctgatgtaactgctgctatc
gtacatgagaacacaaccaaatctgcccttgttttcccagacattctcattcctactcct
gctcccacacctgcccctaatgctcccactgctctgagctttgccacacctgctgccccc
acggtcactatcacacctgcttctactacctacgacaccccaacacccactctgaccccc
cacatacccatcaccacagagccccaagccccagagatagagtttgagttgaccaatggg
gtggcgactaagagcccctccctgcccccagcagggcccattaggtttcagagtagtccc
actccctcccctgcccctgtcccttcctcctccttccaggctaacggagacgggttcggg
gcagacctccaggcctcaggccctcctgctctggaggagttagacagtctggccaaggct
gctccactcaacaacgagaagatatttggagatgagaagagtaaagcagaggaggtgaag
acatcccagtcagaggtgaccgcagaacacaacgatgtcacacagacaaacaccagcgac
agcaaggcatga
DBGET
integrated database retrieval system
