Salvelinus fontinalis (brook trout): 129822190
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Entry
129822190 CDS
T11136
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03030
DNA replication
sfon03420
Nucleotide excision repair
sfon03430
Mismatch repair
sfon03440
Homologous recombination
sfon03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129822190
03420 Nucleotide excision repair
129822190
03430 Mismatch repair
129822190
03440 Homologous recombination
129822190
03460 Fanconi anemia pathway
129822190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfon03000
]
129822190
03032 DNA replication proteins [BR:
sfon03032
]
129822190
03400 DNA repair and recombination proteins [BR:
sfon03400
]
129822190
Transcription factors [BR:
sfon03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
129822190
DNA replication proteins [BR:
sfon03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
129822190
DNA repair and recombination proteins [BR:
sfon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
129822190
MMR (mismatch excision repair)
129822190
DSBR (double strand breaks repair)
HR (homologous recombination)
129822190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
129822190
NCBI-ProteinID:
XP_055736232
LinkDB
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Position
24:complement(24110190..24153062)
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AA seq
605 aa
AA seq
DB search
MLTNGAIEALTKGSNDLQNPILQLVNIRKIDGGSGPTRFRLMMSDGQHSMSSFMLSTQLN
PMAEDNRLAPNCICQLKRNVTNVLKDGRRVVIILDMEVVTSADKVAGKIGEPQPYVEGQS
KAPQSASNPSVHPLQPQNGIDGSMYKGPSREFGGKKCMPPSALPSTPGGSAKVVPIASLN
PYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVTAFTQEVDKFYSIIET
GKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQDVPMVQCNFVSIADLQAR
EKDTILDVIGVCKSVSDVTRLNTKNNREVSKRTLNLMDQSGKLVEVTLWGEEAENFDGSG
QPILAIKGAKLSDYGGRSLSASFSSTVMVNPDIPEAYKLRGWYDKEGHSMDGQSLTEART
GGGGGGNTNWKTLADIKTEHLGHGDKADYFSCIATIVYIRKENCLYQACPSQDCNKKVVD
QQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKD
SNEAAFEEIFQQANFHTFVFRNRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIMNIRK
MASAQ
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgctgacaaatggagcgatagaggccctaaccaaaggctctaatgatttacaaaacccc
atacttcaattagtgaacatccgtaaaattgatggaggcagtggaccaacccgctttcgt
ctgatgatgagtgatggacagcactcaatgtcctcgttcatgctctccacccagctcaac
ccaatggccgaggacaaccgactggccccaaactgtatctgtcagctgaagaggaacgtg
accaatgtcttaaaggatggacggcgtgtggtgatcatactggacatggaggtggtgacg
tctgctgataaggtcgctggaaagatcggagagccccagccttacgtggaaggtcagagt
aaagccccacagtcagcctccaatccctcagtccaccccctgcaaccccagaatggaatt
gatggctccatgtacaaaggtcccagcagagagtttggggggaagaagtgcatgcctccg
tctgcattgcccagcactcctgggggatccgccaaagtcgtgcccatcgccagcctcaac
ccctaccagtcaaagtggaccatccgagcccgtgtcaccaacaagagcggcatccgcacc
tggagcaactctcgtggtgacggcaagctgttctctatggagattgtggatgagagtgga
gagatcagagtgactgcctttacccaggaggtggacaaattctacagcatcatcgagact
ggcaaggtgttctacatctccaagggatccctgaagatcgccaacaagcagtactcatcc
ctgaagaatgactatgagatgaccttgaatggagagtccaccatcatcccctgtgaagac
acccaggacgtacccatggtgcagtgcaacttcgtctccatcgccgacctgcaggcccgt
gaaaaggacaccattttggatgtgattggagtgtgcaagagcgtgtccgacgtgacccgc
ctcaacaccaagaacaaccgtgaggtctccaagaggacgctcaacctgatggaccagtct
ggtaaactggtcgaggtcaccctgtggggagaggaggcagagaactttgatggctctggg
cagcccatcctggccatcaaaggggccaagctgtcggactatgggggcagatctctatct
gcttcgttcagcagcaccgtcatggtcaaccccgacatccctgaggcatacaagctgcgg
ggctggtatgacaaggagggccactctatggatggccagtctctgacggaggcgaggaca
ggtgggggaggaggagggaacaccaactggaagaccctggctgacatcaagacggagcac
cttggacacggagacaaggcagactacttcagctgcatcgccaccatagtgtacatccgt
aaggagaactgtctgtaccaggcgtgccctagtcaggactgcaataagaaggtggtggac
cagcagaacggcatgttccgctgtgagaagtgtgacaaagagttccccaacttcaagtac
cgactcatcctctctgccaacatagcagactacggggacaaccagtgggtgacctgcttt
caggagagtgctgaagccatcttgggacagaacgctgcttacctagggcagctcaaggac
tcgaatgaagctgccttcgaggagatctttcagcaggccaacttccacacgttcgttttc
cgtaacagagtcaagctggagacctacaatgacgagtcccggatcaaggccacggtgatg
gaggtgaaacctgtggaccacaaggagtacagcaagagactcatcatgaacatcaggaag
atggcttccgcccaataa
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