Salvelinus fontinalis (brook trout): 129822217
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Entry
129822217 CDS
T11136
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfon03021
]
129822217
03036 Chromosome and associated proteins [BR:
sfon03036
]
129822217
Transcription machinery [BR:
sfon03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
129822217
Chromosome and associated proteins [BR:
sfon03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
129822217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
Spt6_S1
S1
S1_RRP5
HHH_3
HHH_9
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
129822217
NCBI-ProteinID:
XP_055736280
LinkDB
All DBs
Position
24:complement(25090324..25132729)
Genome browser
AA seq
1741 aa
AA seq
DB search
MDFIEREAEESEEEFGSPEDTEKKALKHATANDDEEEEEENTEDQDADGNLCGLIDDGVD
EGGGEEEDEEEGNKDKEGDSDSGEEIGHRKRKRSFDDRLDDDDIDLIEENLGVKVKRQKF
RRLRDMSDDEDEEGDEDVREAHEKDMIADEIFMGTGADEGEALDVPLHPGEDEEEDDEES
DIDDFIVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGGDFDFAEFDTEAYEDAEEEEE
DADEESWDRPKKQAKKRVGRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSTRV
KPAEDDELEQEAEWIYRNAFSTLTISMQENADYLDRGPTTTFSRKGPSTIQKIKEALNFM
RNQHFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWTQLKTRKQNLRRLFQKMQGYQFE
QISADPDKPLADGIRPLDTSDLERLKDVQSSDELGDVYNHFLLYYGRDIPKMQNAARSSK
KKLKKIKVDEDGNEQEVEEEEEEEEEQSKGPDLKLASRRDMYSICQCAGLDGLAKKFGLT
PEQFGENLRDSYQRHETEQFPAEPMELAKDYICSQFSTAEAVLEGTRYMVAMQIAREPLV
RHVLRQTFQERAKINIKPTKKGKKDVDEAHYGYSFKYLKNKPVKELNGDQFLKMFQAEEE
GLLTINICIDLIGVKGYGGDQAYYEEIKQFYYRDEFSHQVQEWNRQRTLAIERSLKQFLY
PQMAKELKNKLIAEAKENIIKACSRKLYNWLKVAPYRPDQQVEEEDEELMSEAHGKGIRV
LGVAFSSSRDTPVFCALVNGDGEVGDFLRLPYFLKRRNAWREDEREKKIHDIETLKKFLN
SKKPHIIAIAGENRDAQMVIEDIKRTASELEQESSFPTIGVELVDNELAMLYMNSKKSEA
DFRDYPPLLRQAVSVARKIQDPLVEYAQVCSSDEDILCLKLHPLQEHVVKEDLLNALYCE
FINRVNEVGVDVNRAMAHPYTQSLVQYVCGLGPRKGSHLLRILKQNNTRLENRTQLVTMC
HMGPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAE
DANPAGALEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRSTY
RGPNTEEIFNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDETGLWQCPFC
QQDNFPELSEVWNHFDSGSCPGQAIGVRCRMDNGVTGFIPTKFLSDKVVKHPEERVKVGM
TVHCRIMKIDIEKLSVDLTCRTSDLSDKNNEWKLPKDTYYDFDTETEDVKQEEEAKKKQQ
RTTYIKRVIAHPSFHNINFKQAEKMMESMDQGDVIIRPSSKGENHLTVTWKVADGIYQHI
DVREEGKENAFSLGHTLWINTEEFEDLDEITARYVQPMAAFARDLLGHKYFQECNGGDRK
KMEEVLVKSKKEKPTFIPYYVSACRELPGKFLLGYQPRGKPRVEFVTVTPEGFRYRGQIF
PTVNGLFRWFKDHFQEPVAGITPSSSSRTRTPASVNATPANINIADLTRAVNALPQNMTS
QMFSAIAAVTGQGQNPNTTPAGWASSQYGYTGGSSGGGGSSSAYHVFATPAQQPIATPLL
TPSYSYTTPTPSQQQTITTPQYPSSTPQSSHGSHGHGHRPSSSTPSSTSSSRHHRTPTPK
ATSHTAVDWGKMAEQWLQEKEAERKKTRPRMTPRPSPSPMIESTPMSLAGDATPLLDEMD
R
NT seq
5226 nt
NT seq
+upstream
nt +downstream
nt
atggatttcatcgagagggaagcagaggagtctgaggaggaatttgggagtccagaggac
acagagaaaaaggcactgaagcatgctacagcaaatgatgatgaggaggaggaagaggag
aatactgaggatcaagatgcagatggaaacctctgtggtctgattgatgatggtgtggat
gaagggggaggggaggaagaggatgaggaagaagggaataaagataaagaaggtgatagt
gactctggggaggaaattggacaccgtaagaggaagagaagctttgacgaccgcttggat
gatgatgatattgatctcattgaggagaatttgggagtaaaagtgaaaaggcaaaagttc
cgtcgtttgcgagacatgtcggatgatgaggatgaggagggagatgaagatgtcagggag
gcccatgagaaggacatgatagcggatgagatcttcatggggacaggagcggatgagggt
gaggcattggatgtgcctttgcatcccggggaggatgaggaggaggacgatgaggagtct
gatatcgatgactttattgtggatgatgacggacagcccttgaaaaaacccaagtggagg
aagaagctgccaggatatacagatgcagcccttcaggaggcccaagagatatttggaggg
gactttgactttgccgagtttgacactgaagcctatgaagatgcagaggaggaggaggag
gatgcagatgaagagtcatgggaccggcccaagaagcaggccaagaagagggtgggtcga
cgcagtatctttgagatctatgagcctagcgagctggagagcagtcacatgacggaccag
gacaacgagatccgctccactgacatgccagagaggttccagttgcgctccactcgtgtg
aagccagcagaggatgatgagctggaacaggaggctgagtggatctataggaatgccttc
tctactctcaccatctccatgcaggagaacgcagactatttggacagaggtccaaccact
actttcagcagaaaaggccccagcaccatacagaagattaaagaggctttgaatttcatg
agaaaccaacactttgaggttccgtttatagcgttctacaggaaagagtatgtggaacct
gaactcaatatcaatgatctgtggaaggtttggcagtgggatgagaagtggacccagctg
aaaacccgcaaacagaacctgagacgcctgttccagaaaatgcagggataccagtttgaa
cagatctcagctgacccagataagccactggctgatggcattcgaccactagacacttca
gatttagagaggctgaaggatgtccagtctagtgatgaactgggcgacgtctacaaccat
ttcctgctgtactatggccgggatattccaaagatgcagaatgcagccaggtccagcaag
aaaaagctgaagaagatcaaagtggatgaagatggtaatgagcaggaagtagaggaggag
gaagaggaagaagaggagcagtcaaaagggccggacctgaagcttgcatctcgcagggat
atgtacagcatctgccagtgtgcaggactggatggcctggccaagaagtttggtctgact
ccagagcagtttggagaaaacctacgtgacagttaccagcgtcacgagactgagcagttt
cctgctgagcccatggagctggctaaggactacatctgcagccagttcagcacagcggag
gcagtactggaggggactcgctacatggttgccatgcagatcgcccgggagcctctagtc
agacatgtgctccgacagacgttccaggaaagagccaagatcaacatcaaacccaccaag
aagggaaagaaggatgtggatgaggcccattatggttactcctttaagtatctgaaaaac
aagcctgtaaaggagctgaatggtgaccagttcctcaagatgttccaggcagaggaagag
ggcctgctcaccataaacatctgtattgacctaattggagtgaaggggtacggaggtgac
caggcatactatgaagagataaagcagttttactacagagatgagttcagccaccaggtt
caggagtggaacagacagcgcactctggccattgaacgatccctcaaacagttcctttac
ccgcagatggcgaaagagctgaagaacaaacttattgcagaagcaaaggagaacatcatc
aaggcctgcagcaggaagctgtataactggctgaaggtggcgccctatcggcccgaccaa
caagtggaggaggaagatgaggagctcatgtctgaggcccacggcaaagggatccgcgtg
ctgggagtggccttctcatccagcagagacaccccagtgttctgtgccctggtgaacggt
gacggagaggtgggggatttcctcaggcttccttacttcctgaagaggaggaacgcatgg
agggaggatgaaagggagaaaaagatccacgatattgaaaccctgaagaagtttctgaac
agcaagaagcctcacatcatcgctatagctggggagaacagggacgcccagatggtgatt
gaggacattaaacgcactgccagtgagctggagcaggagtcctccttccccaccatcggg
gtggagctggttgacaatgaactggccatgctctacatgaacagcaagaagtcagaggca
gatttccgggactacccccctctcctaagacaggctgtgtctgtggccaggaagatccag
gaccccctggtggagtatgctcaggtgtgcagcagtgacgaagacatcctgtgcctcaag
ttacatcctttgcaggagcatgtagtgaaggaggacctgctgaatgctctgtactgtgag
ttcatcaaccgggtgaatgaagtgggtgtggatgtgaaccgggccatggcccacccctac
acccagagcctggtgcagtacgtctgtggcctggggcccaggaagggatcccacctgctc
aggatcctgaagcaaaataacactcgtctggaaaaccgcactcaactggtcaccatgtgt
cacatgggccccaaggtcttcatcaactgtgctggtttcatcaagattgacacagcttca
cttggagacagtacggactcctatattgaggttctggacggatcgcgggtgcacccagag
acctacgagtgggccaggaagatggccgtggatgccctggagtacgatgagtcagcggag
gacgccaacccggccggagcactggaggagatcctggaaaacccggagcggctcaaagac
ctagacttggacgcctttgctgaggagctggaaagacagggctatggtaacaagggcatc
accctgtatgacatccgtgctgagctgagctgcaggtacaaagacctgaggtccacctac
agaggacctaacacagaggagatcttcaacctgctcaccaaggagacaccagagaccttt
tacatcggtaaactgatcaccagtgtggtgacaggcattgctcaccgccgcccccagggt
gagagttatgaccaggccataaggaatgatgagacaggtctgtggcagtgtcctttctgt
cagcaggataacttccctgagctcagcgaggtgtggaatcattttgacagtggctcctgc
cctggccaagctattggggtccgctgtcgcatggacaacggagtcaccggctttatccca
accaagttcctcagtgacaaagtggtcaagcaccctgaagaaagggttaaggtgggcatg
acagtgcactgcaggatcatgaagattgacattgagaagctcagtgtggatctgacctgt
cggacgtcagacctgtcggataagaacaatgagtggaagcttcccaaggacacctactac
gactttgacactgagacagaggatgtgaagcaggaggaggaggccaagaagaaacagcag
agaacaacctacatcaagagggtgatagcccacccatcgttccataacatcaacttcaag
caggcagagaagatgatggagtccatggaccagggagatgtgatcatcaggcccagcagt
aagggagagaaccacctgactgttacttggaaggttgctgatggcatctaccagcacatt
gacgtacgagaggagggcaaggagaacgccttcagcctgggacataccctgtggatcaac
actgaggaatttgaagatctggatgaaatcacagccagatacgttcaaccaatggctgcg
tttgctcgcgatctacttggtcacaagtattttcaagaatgcaatggtggagaccgaaag
aaaatggaggaggtcttggtgaaaagcaagaaggaaaagcctacattcatcccctactat
gtgtctgcctgtagagagctgccagggaagtttctgctcggttaccagccccgcggaaaa
ccaagggttgagtttgtgactgtcacgcctgaggggttcagatacagaggccagattttt
cccacagtcaatggactcttccgctggttcaaagaccatttccaggagccagtggcaggg
attactcccagcagtagcagtagaacacgaaccccagcctctgtcaatgccacgccagcc
aatattaacattgcagatctgactcgtgcagtgaacgccctccctcagaacatgacctct
cagatgttcagtgccattgccgcggtaacgggccagggccagaaccccaacaccacacct
gccggatgggcatccagccagtacggctatactggtggcagcagcggcggaggggggagc
agcagcgcctatcatgtgtttgccacaccagctcagcagcccattgctactccccttctg
acgcccagctattcatacaccacccccacccccagccagcagcagactatcaccacgccc
cagtaccccagcagcactccccagtcctcacacggatcacacggacatggacaccgccct
tcctcctccacaccatcatcaacatcctcctcccgccaccacaggacaccaacaccaaag
gcaacttcccacacagcggtggactggggaaagatggccgagcagtggctccaggagaaa
gaggcagagcgcaaaaagacgaggcccagaatgaccccacgaccttctcccagccccatg
atcgagagcactcccatgtccctcgctggagacgccacaccactgctggatgagatggat
cgctag
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integrated database retrieval system
