Salvelinus fontinalis (brook trout): 129823709
Help
Entry
129823709 CDS
T11136
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04382
Cornified envelope formation
sfon04510
Focal adhesion
sfon04512
ECM-receptor interaction
sfon04518
Integrin signaling
sfon04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129823709
04518 Integrin signaling
129823709
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129823709
09142 Cell motility
04820 Cytoskeleton in muscle cells
129823709
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
129823709
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfon04147
]
129823709
00536 Glycosaminoglycan binding proteins [BR:
sfon00536
]
129823709
Exosome [BR:
sfon04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129823709
Glycosaminoglycan binding proteins [BR:
sfon00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129823709
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129823709
NCBI-ProteinID:
XP_055738615
LinkDB
All DBs
Position
26:15071647..15133253
Genome browser
AA seq
1648 aa
AA seq
DB search
MRTALLCFALGVMLRGTEAKDCACTGKSMCHCEGVKGNKGERGCAGETGPPGSVGHPGSE
GHPGPVGPKGDVGPHGPPGTDGDRGPEGKEGFSATPGLPGIPGLQGPMGQPGSPGCNGTE
GERGPTGPAGPSDGDDGLRGLPGAPGPKGESQMLIGIGQPGRPGPRGRDGDQGVHGVTGP
TGQQGDVGPRGVIGLLGLPGAPGLKGQEGRSSSIPGSRGPKGHQGPPGVPGPKGIKLYAH
APSDLKGETGDLGEKGCKGSPGYAGQVNLKEKGDQGGIGTEGRPGKDGRQGPAGYEGRKG
NPGLAGPDGIPGPWGQKGVQGQDGDPGEVTMIGCDVIGPEGQPGFTGPPGPTGVTGPPGV
TGFQGPPGSPGPNHRGDPDNLGVKGHSGPKGDKGDPGPIIQGEPGREGSQGTTGDLGAPG
PPGESDNLKGLMGPPGAKGAQGEQGYSGQYGLKGEKGEICSLCTGKGSGEPGLPGSPGQP
GLPGFSAGPGPQGEPGFKGPPGSPGQQGLHGPSGVPGRPGPKGNSGSRNHQGIKGEKGAP
GPAGRSGLDGLYGAPGFRGRKGQQGPKGDPYYGPLGLKGDIGVPGPPGPQGSPGPDGSPG
PVGIGPLGPSGPKGNSGVPGLPGTPGYQGQKGEPCSSVADQGVPGLPGKAGLPGTRGPPG
PRGGAGNPGEKGDRGVFSTLGRRGPTGQKGDKGQPGRPSTSGSGCPGRPGVMGFPGAQGP
KGDAGFEILGPAGLKGFPGGVGAQGPPGDPGVLGRPGSPGPPGLNGSSGPKGSKGVDGSQ
GPPGYASTCCTEGPTGPPGLSGRPGPPGVNGEMGSRGDPGAPGFGSSGPAGDPGPPGASG
PGVQGLTGQMGGRGRDGLPGVAGPRGDPGQEGRPGPGPDGPPGAEGPPGPKGSVGPDGEK
GHSGVPGCVGGDGPPGPCGPSSNTVIHGPPGDPGKRGLPGFHGAQGHPGYPGPKGIDGRD
GEPGNGPRGCPGDPGADGLCPGGPGPSGLRGNMGLMGLPGPRGIKGGPGSNGDPGRDGMP
GPCGPKGTKGESSCAKPGLPGSPGQKGEPALYNKHDSKGMKGSPGYAGPPGSHGPSGAKG
DPGHHGHHGAQGPAGQPGTDGSPGPPGLPASHGAPGQPGLPGPPGPCGPKGNQGYDGIPG
PAGQKGETLIVGSTPGPRGKNGLPGPKGDVGFPGPTPLERPGCSGDRGHRGNEGPQGSRG
RPGSGGVCVNGLKGDAGPQGKPGSPGQQGPQGKPGPGGYECKGDRGDLGAPGDRGLDGPT
GDPGPPGLRGPGAIPGPPGPIGSPGHSGTPGVPGEMGDPSYSPGPKGPNGSKGQPGPPGC
PGLNVTVRSEKGDPGPPGYAGKQGPPGPSGSSGQPGLTGPPGPEGQQGHSPPGLPGFPGR
KGDKGSPGLTGRLGFQGFPGQKGSLGPRGCNTTGLADSFLLARHSQTIRVPDCPQGTILI
YSGYSLLFINGNKRAHGQDLGSVGSCLPRFSTMPFLFCDTDNTCRYAARNDYSYWLSTEK
PMPRSMDLIRGDEISSYISRCSVCEGSSNAMAIHSQTAQLPDCPGDWESLWTGYSFVMQT
GAGAEGSGQPLGSPGSCLEHFRQVPFIECHGRGTCNYFPDSYSFWLALLDPNHMFSKPVP
QTVKGRLLENVISRCRVCRKPRSNGSAL
NT seq
4947 nt
NT seq
+upstream
nt +downstream
nt
atgaggactgcattgctttgttttgctttgggggtgatgctacgaggaactgaggcgaag
gattgtgcgtgtactgggaagtccatgtgtcactgtgaaggagttaaaggcaataaggga
gaaaggggttgtgcaggagagacgggtccacctgggtcggttgggcatccaggctcagag
ggtcaccctggaccagtggggccaaagggagatgtgggccctcatggacctccaggaaca
gatggcgatcggggacctgaaggcaaagaaggattttctgcgacaccaggtctaccgggc
atcccaggccttcaaggaccaatgggccaaccaggttccccaggatgcaatgggacagag
ggtgagagaggtcctactggtccagctggtcccagtgatggtgatgatggattaagaggt
ttacctggagcacctgggccaaagggtgaatcccaaatgttaattgggattggacagcca
gggagacctggaccccgaggaagggacggtgaccagggtgtccacggggtaacaggaccg
acaggacaacaaggggacgttggaccccgtggtgtcattggattgctaggtctacccggg
gccccagggttaaagggtcaagagggacgcagctccagtatccctggctctcgtggtcca
aagggacaccaagggccccctggagtcccgggacccaaagggatcaagctatatgcccac
gctccctccgatttgaagggggagacaggggatctgggtgagaagggctgtaagggttca
cctggttatgctggccaggtcaacttgaaggaaaaaggggaccaggggggcattggcact
gagggaagaccagggaaggatgggcgtcaagggcccgctggatatgaggggagaaagggg
aatcccggtttagcaggacctgatggaatacctggaccgtggggacagaagggcgtccag
ggtcaagacggagaccctggggaggtgaccatgattggctgtgatgtaattggcccagaa
ggacaaccaggatttactggccccccggggcccactggggttactggtcccccaggtgtc
actggtttccaggggcctcctggatctccaggtcctaaccacagaggagatcccgacaat
ctgggagtgaagggccacagtgggcctaaaggggataaaggagacccaggacccatcatc
cagggagagccaggcagggaaggctcacaaggaacaactggagaccttggagccccggga
ccacctggagaatcagataatctgaagggccttatgggacctccgggggcaaagggagcc
cagggagaacaagggtacagtggccaatatggattgaaaggtgagaaaggggagatctgt
agtttgtgtacgggaaaaggatctggagagcctggactcccaggttcccctggtcagcct
ggactcccaggctttagtgcaggaccaggaccccaaggagagccaggattcaaaggaccc
ccgggatcacctggacaacagggtctccatggcccttcaggtgttccgggacgcccaggg
ccaaaaggaaattcaggttcccgcaaccaccaggggataaagggagagaaaggagcccca
ggaccagctggcagatcagggctggacggcctatacggggcccctggcttccgtggacgc
aagggccaacaaggccctaagggtgatccatactatggtccactgggtctgaagggagat
attggtgtcccaggccctcccgggccacagggatccccaggaccagacggttcaccaggt
ccagtaggcataggaccgcttggcccctcaggacctaaaggcaatagtggggtaccaggt
ctacctggtacacctggttaccaaggtcagaagggcgagccctgcagcagtgtggctgac
cagggagtcccaggcctaccgggaaaggcggggctgccgggcacacggggccccccaggt
cctcgtggtggtgctggtaacccgggggagaaaggggaccgtggtgtattctccaccctt
ggaagacgaggacccactggacagaaaggtgacaaagggcagccgggacgcccaagtacc
tctggaagtggctgtcctggacgacccggcgtaatgggattccctggggctcaagggcca
aagggtgatgctgggtttgagatcctaggtccagccggccttaaaggtttcccaggtggt
gttggggcccagggccctcctggagatccaggagtactgggccgaccagggagtccggga
ccacccggcctcaatgggtcctcaggccccaaaggaagtaaaggtgtagatggttcccaa
ggacctcctggttacgcaagtacttgctgtactgaaggcccaaccggaccaccagggctg
tcaggcagacctggacccccaggtgttaatggagagatgggttcgcgtggggaccctggc
gccccggggtttggaagttcaggtccggctggtgaccctgggccccctggggcctccgga
cccggagtgcagggcctgactggacagatgggaggcagagggagagacgggttaccaggt
gtagcaggtcctagaggtgaccctgggcaggaaggaagacctggaccgggccctgacggc
ccacctggagctgaaggaccacccggtcccaaagggtcggttggccctgatggggagaaa
ggtcacagtggtgtaccaggctgtgtggggggcgacgggcccccaggcccttgtggacca
tcatccaatacagtcatacacgggcccccaggggaccctgggaaacgtggtctgcctggt
ttccatggtgctcaaggacatcctggatatcctggacccaaaggcattgatgggagggac
ggtgaaccaggaaatgggccgagaggctgtccaggtgatcctggggctgatggactgtgc
ccaggaggaccaggcccatctggactcagaggaaatatggggctcatgggtctaccaggt
ccccgtggaataaagggaggcccgggttccaatggagacccaggacgagacggtatgccc
ggtccatgcgggccaaaaggaactaaaggagagtccagttgtgcaaaaccaggcctccca
ggatcacctggacagaagggtgagccagccttgtataacaaacatgactccaaaggaatg
aaaggctctcctggttacgcaggtcctccaggctcccacggaccctctggagccaaagga
gacccaggacatcatggacatcatggagcccaaggtcctgccggccaaccaggtaccgat
ggttccccaggccccccaggactccctgcgtcacatggagctccaggacaaccggggtta
cctggtcctcctggtccctgtggtcctaaaggtaaccagggttacgatggcattcctgga
cctgctggtcagaagggagagacactgattgtgggatcaactcctggcccacgtggaaag
aatggactgccaggtccaaagggagatgtgggtttccctggccccactcctctggagcgc
ccagggtgttcaggagatcggggccaccgaggcaacgaaggaccccagggttctcgcggg
aggccagggtctggtggtgtttgtgtcaatgggctgaaaggagatgctggtccccagggc
aaacctggtagccctggacagcagggtccgcagggaaagccagggcctggaggctatgaa
tgtaaaggggacaggggagacctgggcgctccaggggacagaggcttggacgggcccaca
ggggaccccggacctccagggctacggggaccaggagccatccctggacctccaggacca
atcggttccccaggtcactctggaaccccaggagtccccggtgagatgggtgatcctagt
tatagccctggcccgaaaggaccaaatggatccaaaggccaaccaggaccaccaggttgt
ccggggcttaacgtgacagtgagatccgaaaagggggatccgggcccacccggttacgcc
ggtaaacagggacctccaggtcccagtgggtcgtcaggacaaccaggattaacagggccc
ccaggccctgagggtcaacagggacacagccctccaggcttgcctggcttccccggacgc
aagggagacaaaggatcgccaggactgacagggaggttggggttccaggggtttccgggt
cagaagggttctcttggcccaaggggctgcaacacgacaggcctggctgacagtttcctg
ctggcccgacacagccagaccatcagagtgcctgactgcccgcaaggcaccatcctcatc
tactctggatactctctgctcttcatcaatggcaacaaaagggctcacggacaagacctg
ggctccgtgggcagctgcctgcctcgtttctccaccatgcccttcctgttctgtgacacg
gacaacacctgtcgctacgccgcccgcaacgactactcttattggctgtccacggagaag
cccatgccacgcagcatggacctgatcagaggagacgagatcagcagctacatcagcagg
tgttcagtgtgtgagggcagctccaatgccatggccatccacagccagaccgcccagctc
ccagactgtcctggtgactgggaatccctgtggactggatactcctttgtcatgcaaacg
ggtgcgggtgctgaggggtcgggccagcctctgggctccccgggctcgtgtctagaacac
ttccgccaggtccccttcatcgagtgtcacggccggggaacctgtaactacttccctgac
tcctacagcttctggctggccttgctcgaccccaaccacatgttcagtaagcctgtgccc
cagacggtgaagggacgtcttctagagaatgtcatcagtcgctgccgcgtatgcaggaaa
ccacgaagcaatggtagtgcattataa
DBGET
integrated database retrieval system
