Salvelinus fontinalis (brook trout): 129823896
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Entry
129823896 CDS
T11136
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129823896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129823896
03041 Spliceosome [BR:
sfon03041
]
129823896
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129823896
Spliceosome [BR:
sfon03041
]
Complex B
Other components
Prp19-related factors
129823896
Complex C
129823896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129823896
NCBI-ProteinID:
XP_055738955
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Position
2:complement(66835623..66850792)
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AA seq
851 aa
AA seq
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MPSLNGKPDVMFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGVKSILNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPAYEEINNCHERALVFMHKMPRIWLDYCQFLVAQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSCSKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGKDEEENIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPRQIINTYTEAVQTVDPMKATGKPSSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAGVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESMGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVDNTERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTNATGTISDLAPGQMGLDDMKLLEQQAQLLAAEAEQ
DKPKLKEKILFVRSDTSRSELAELAKQANPDEIDIDIDDEDEDEDQGPEEVQLEQKTVPT
AVFGGLKEGED
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgccctctctaaatgggaaaccggacgtcatgtttgaggaagatgacctgccttatgag
gaggagatcatcaggaatccgtactcggtcaagtgctggatgcgctacatcgagttcaaa
cagaatggcgtcaagtccatcctcaacatgatctatgaacgagctctgaaagagctacct
ggcagttacaagttatggtacaactacctgagagagagacggaaacaggtcaaagggaag
tgcatcacggagccagcctatgaggagatcaacaactgccatgaaagagcactggttttc
atgcacaagatgccgaggatctggctggactactgccagttcctggtagctcagtgtaag
atcaccaggagcagacgcacgtttgaccgagcactccgagccctgcccgtcactcagcac
cctcgcatctggcccctgtacctccgctttgcccggaacctgcccctgcctgagaccgcc
atccgtgtctatcgcaggtacctcaagctgtccccagagaatgcagaggagtacatagat
tacctgcgttcctgcagcaagctggatgaagcagcggtgcgtctggcagccgttgtcaac
gatgagagctttgtgtccaaagagggcaagtctaactaccagctatggcacgagctgtgt
gacctgatctctcagaacccagacaaggtgaactctctgaatgttggggccatcatccgt
ggaggcctcactcgtttcacagaccagctgggcaaactctggtgctccctggctgactac
tacattcgcagtggacattttgaaaaggctcgtgatgtgtatgaggaggccatcttgacg
gtggtgacggtgagagatttcacccaggtgttcgacagctacgcccagtttgaggagagc
atgatcgctgccaagatggagactacctccgagatggggaaagatgaagaagagaacata
gacctggagctgcgtctggcccgctttgagcagctgatcgcccgcaggcccctcctgctg
aacagtgtgctgctgagacagaacccccacaacgtccacgagtggcataagagggtcaaa
ctgtacgaggggaaaccacgacagatcatcaacacctacacagaggcagttcagactgta
gaccctatgaaggctacagggaaacccagctctctctgggtctccttcgccaagttctat
gaggagaacgagcagctagacgacgcacggaccatctttgagaaagccaccaaggtgaac
tacaagcaggttgacgacctggctggcgtgtggtgtgaatacggagagatggagctacgc
catgagaactacgaacaggcgctacgtatactgaggaaagcaactgccatcccatccaag
aaggcggagtactttgacgtgtcagagccggtgcagaacagagtgtacaagtctctgaag
gtctggtccatgctggctgacctggaggagagtatgggaaccttccagtccaccaaggcg
gtgtacgaccgcatcattgacctgcgcatagccacaccccagataatcatcaactacgcc
atgttcctggaggagcacaactactttgaggagagcttcaaggcgtacgagcgcggcatc
gccctcttcaggtggcccaacgtctatgacatctggaacacctacctcaccaagttcatc
gaccgctacggtggcaagaagctggagagggcccgggacctgtttgagcaggcgctggat
ggctgtccagccaagttcgccaagaccatctacctgctgtacgccaaactggaggaggag
tttgggttggcgcgtcatgccatggcggtgtacgaaagagccacgcaggcggtggacaac
acggagaggcatcatatgttcaacatctacatcaagagggctgcagagatctacggcgtc
acctacaccagagctatctaccagaaagccatcgaggtgcttccagacgaacactccagg
gacatgtgtctgcgcttcgctgacatggagagcaaactgggcgagatcgaccggggacga
gccatatactcctactgctctcagatctgtgacccaaggatgacggccacgttctggcag
acatggaaggagtttgagatccgccatgggaatgaagacactatccgggagatgctgcgg
atcaagcgcagcgtccaggccacgtataacacacaggtcaacttcatgtcctcacagatg
atgaaggccaccaccaacgccaccggcaccatctcagatcttgccccgggccagatgggg
ctggatgatatgaaactgttggagcagcaggcccaactgctggccgccgaggctgaacag
gacaaacccaaactcaaagagaagatcctcttcgtcaggagtgacacgtcacgcagtgag
ctggctgaactggccaaacaagccaaccctgatgagattgatattgatattgatgatgag
gatgaggatgaagaccagggcccagaggaggtgcagttggaacagaagaccgtccccacc
gctgtctttggagggctgaaagaaggagaagattga
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