Salvelinus fontinalis (brook trout): 129823897
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Entry
129823897 CDS
T11136
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfon03000
]
129823897 (rc3h1b)
04121 Ubiquitin system [BR:
sfon04121
]
129823897 (rc3h1b)
Transcription factors [BR:
sfon03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
129823897 (rc3h1b)
Ubiquitin system [BR:
sfon04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129823897 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
zf-CCCH_UNK
zf_CCCH_4
Prok-RING_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
129823897
NCBI-ProteinID:
XP_055738952
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All DBs
Position
26:21086342..21113253
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AA seq
1110 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAIATD
IEQLPVNTALLQLVGGQVPKVQPVALITSPEDSQHYEEARQCVEELALYLKPLSNNRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGLALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNQLRPHLELL
ANIDPSPDAPPPMWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSSGLLSDDCLPLDMGVTRKPS
PLTNGSAGHPMPQLITRGTDGVTYDLLCKPKMDGGSSSSPGSPPDFLDSGPKQGFLQPPL
AMGHPRGPGDPMPKQMPVGVMPRGPQMYPQQLPDMYYSDSRPLPSASQYEPSQYPQGYPY
QQPPQYSTQRYIRNLPAPSEPAGPPYQEPYPGYGPPERPYPAPHSGPPYSYLPHYDTRGR
HGPYPGPQPYPSQRDDMVRMSPAPLDMPPNHHYQQEQPARERYPPEGYYPTGAQPQSMRS
NVREQYRRSSQPSLDYLHHRRKELMAQLEERKVISPPPFAASPTLPHAFPSDYPPEYGEE
SSKAFGKCRESDYAGQYSPWSCDTIGSYIVTKDAKPKDIMAPGAMEMMNVDGKGLRGEPS
MEAQSRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTGPVQAMASAQGPKHMAA
EFSYGHHGGWGGSSYPSHQTGSSSQGHFSEKLSMPAQDREHLKIELQQVNQQITQQTQIH
GMEREVSALAAQPSQPCQNQGQQGKWPGPVGVSSNAALVSSEQLSMELHQVEREIGKRTC
RVAMDSQVAHEVQYKMKAAQNGQQDHKTQLEEIALALGEVSNGSSGLGQDGGVGGAMLSL
TNKASSLSLCTEPGPGVSELQKNGVVHSCS
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaagccccacaatggacggagttcctgctgtgtcccatctgcacgcagacg
ttcgaggagacggtgcggcggcccatctcgctgggctgtggccacaccgtctgcaagatg
tgcctgaacaagctccaccgcaaggcctgccccttcgaccagacagccatcgccaccgac
atcgagcagctgccggtaaacacagccctactgcagcttgtggggggacaggttcccaag
gttcagccggtggccctgatcaccagcccagaggactcacagcactatgaggaggctagg
caatgtgtagaggagctggccctctacctcaaacccctcagcaacaacagaggggtgggt
ctaagcagcacagcccagagcatgctgagtcggcccatgcagaggaagctggtgaccctg
gtccactgtcagctggtggaggaggagggccgggtgcgggccatgagggcagccaggtct
ctaggggagcgcacggtcacagagctcatcctacagcaccagaacccccagcaattgtca
tccaatttgtgggccgccgtccgggcccggggctgccagttcttgggcccagccatgcag
gaggaggctctgaagctggtgctgctggctctggaggatggcttggccctgtccaggaag
gttctggtgctgtttgtggtccagaggttagagccacgcttcccccaggcctccaagacc
agcataggccacgtggtgcagctcctctacagggcctcctgcttcaaggtgaccaagcgc
gacgaggactcgtccctgatgcagctgaaagaggagttcaggacgtatgaggcactgcgg
cgcgaacacgactcccagattgtgcagatcgccatggagggtggcctccgcatcgctccc
gaccagtggtcctccctgctctatggggaccagtcccacaagtcccacatgcagtccatc
atcgacaagttgcaaacgccagcgtcgtttgcccagagcgttcaggagctgaccatcgcc
ttgcagaggacgggcgaccccgccaaccttaaccagctccgaccacacctggaactactg
gccaacatcgaccctagccccgacgccccccctcccatgtgggagcagctggagaagggt
ctggtggcggtgaagacggtggtccacggcctggtggacttcatccagaaccacagcaag
aagggagccgacccacaacagcctccccagcacagtaaatacaagacgtacatgtgtcgg
gacatgaagcagaaggggggctgtccccgaggagccagctgtaccttcgcccactctcag
gaggagctggagaagtaccggaagatgaacaagcgtttggcggctcgcctccctggctca
tccggcctgctgtcggatgactgtctccctctggacatgggggtgactcggaaaccctcg
ccccttaccaacggctcagctggacaccccatgccccagctcatcactcgcggcacggac
ggcgtgacctacgacctgttgtgcaagcccaagatggacggcgggagcagcagctccccg
ggatcgccccctgactttctggattcagggcccaaacaagggttcctccagcctcccctt
gccatgggccaccccagggggccaggcgaccccatgcccaaacagatgcccgtaggtgtg
atgccccgggggcctcagatgtacccccagcagttgcctgacatgtactactccgactca
cgcccattgccctccgcctcccagtacgagccttcgcagtacccccaaggttacccctac
cagcagcccccccagtactccacccagcgctacatccgaaacctccctgcccccagcgag
cccgctggaccaccctaccaggaaccctatcccggctatggccctcctgagcgcccttac
ccagctccccactccggccccccctactcctaccttccccactatgacacccggggccgc
catggcccttaccctggcccccagccatacccctcgcagagggacgacatggtccggatg
agccctgctcccctggacatgccccctaaccaccactaccaacaggagcagccggccagg
gagaggtaccccccagaggggtactacccaactggggcccagccccaatccatgaggtcc
aacgtcagggagcagtacagacgctcctcccagcccagcctggactacctgcaccaccgc
cgcaaggagctgatggcccaactagaagagaggaaggtcatctccccaccacccttcgct
gcctcccccacccttccccatgccttccctagtgactaccccccagagtatggggaggaa
agctccaaagcctttgggaagtgcagggagtcggactacgcgggccagtattctccctgg
tcctgtgacactatcggctcctatattgtcaccaaggacgccaagcccaaagacatcatg
gcgcccggcgccatggagatgatgaatgtggatggtaaaggtctacggggggagccctcc
atggaggcccagtccagacggggagcggaggtaaaagacgacgaccccatcatccccttc
ggcccccagcccaccgtgtcgcgcttcggggccatctcacgcacctccaagacaggctac
cagacgacaggccccgtgcaggccatggcctccgcccagggacccaaacacatggccgcg
gagttctcctatgggcaccacggaggctggggtggctcctcctacccctcccaccagact
ggctcctcctctcagggacacttcagtgaaaagctgtctatgccagctcaggacagagag
catctgaagattgagctccaacaggtcaaccagcagatcacccaacagacccagatccat
ggcatggagagggaggtcagtgccctggcggcacagccctcccaaccatgtcagaaccag
ggccagcaggggaagtggcccggtccagtgggggtttccagcaacgctgccttggtgtcc
agcgaacagctcagcatggagctgcaccaggtggagagggagattggcaagaggacctgc
cgggtggccatggacagccaggtggctcatgaagtccagtacaagatgaaggctgcacag
aatggccagcaggaccacaagacccagctggaggagattgctctggccctcggtgaggta
tctaatggctccagcggtctaggtcaggatggtggtgtgggcggagccatgttgtcactg
accaataaagcgtcttcgctcagcctgtgtactgagccggggcccggagtctcagagctg
cagaagaacggtgtggtccattcctgctcctag
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