Salvelinus fontinalis (brook trout): 129823954
Help
Entry
129823954 CDS
T11136
Name
(RefSeq) 5'-3' exoribonuclease 1-like isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03008
Ribosome biogenesis in eukaryotes
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
129823954
09123 Folding, sorting and degradation
03018 RNA degradation
129823954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129823954
03009 Ribosome biogenesis [BR:
sfon03009
]
129823954
03016 Transfer RNA biogenesis [BR:
sfon03016
]
129823954
03036 Chromosome and associated proteins [BR:
sfon03036
]
129823954
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
129823954
mRNA degradation factors
5'-3' decay
5' exonucleases
129823954
Ribosome biogenesis [BR:
sfon03009
]
Eukaryotic type
Pre-60S particles
RNases
129823954
Transfer RNA biogenesis [BR:
sfon03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
129823954
Chromosome and associated proteins [BR:
sfon03036
]
Eukaryotic type
Gene silencing
piRNA pathway
129823954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
DUF4476
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
129823954
NCBI-ProteinID:
XP_055739072
LinkDB
All DBs
Position
26:complement(23239303..23275900)
Genome browser
AA seq
1704 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
VLPSEARFDSNCITPGTDFMARLQEQLKYFVNSKLSTDNAWKGVNVYLSGHETPGEGEHK
IMEFIRWENTKPDHDPNTRHCLYGLDADLMMLGLTSHEPHFSLLREEVRFGGKKNQKRIT
APEETTFHLLHLSLFREYIDYEFSEVKNKISFEYDLERIIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYRTYISVLPTLGGYLNENGHLNLGNFEKYLEKLSEFDREHFNEVFVDLK
WFESKVGNKYLNEAAGLAAEEAHCKDSRKKDLKDSLCLAALDEVKDRGPSRGFEEEGEEE
DMFEAEFRQYKRTYYMTKMGVEVVSDEFLANQALCYVEGIQWILHYYYHGVQSWSWYYPH
HYAPFLSDVRNIAHLKLNFDMGKPFMPFQQLLGVLPSASKDLLPQSYRHLMTSENSSIIE
YYPLDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMEPYNDHMTKAEKARNCHTQCAVYSY
DAELDYPSTLPDLFPNIMHCHVRVTPVPMDAWHVSLSHVGRSINSSQFYFCGFPTLKHIR
HKFYKKKHGVVVFQQSSRGENMMLEIIPSKEEPVCDNVASQVLGRSVFVNWPHLEEARVV
AVSDGESKFFLEEPAGMQKLYDRDSPPPTKVTYLSDKEQKDWVKDVQGITEHFGKRKGIT
VNETAVVLYTQLLTGRKYVPGQSGQVHLEKQWAKQILPFPYQTIVKDIKAFDSSSTRFKT
LEELYPPTTTVFMVGNPYYGAMGEVQESSDVIKEGRVRVVFTVPCEPPMESLIQNQHKYC
VKYSPGYVLASRLGITGYLVSRFSGSIFVGRGSKKNPHGEQKANVGLNLKFNKKNEEVPG
YTKRTEKEWLYSVAVEDLMAEYLDRFSEVFDLVSRNSHDDVFYEDDIWPGVDQNGAERVK
EITSWLKTHPVADIARASCDLQILDTAIVEQIEEVVAKVKKSSKKVRVTVKPHLLFRPLE
QQHGVVPDPDAEYHLFDRVVNVRESFSVPLGLRGTIIGIKGADREAEVLYEVVFDEEFAG
GLTIRCASGRGYRLPPCALINLSHGCRFEQGSHKLTAIVKPQPSSHHHAHNKELSGLNHS
PRSPFIPTPQQNGRQNILREDTQGNKNVHHNALSQKHQPKGKDEEFSNVWQSLQSSGMPQ
KPPAHWQQNNACNSAWGPGSPGQEGQFQGQQGRNQPQSQQQQPPKPGPAGSIRLLKRNED
VNTLFPAQNATKKQTEFEDLIANLKITKGNEPTAPPPGNQPTSQSEEPLSPQSFAMKGTL
ALKEMLNIGSVPDSTSLSSSNTQQQNRRRATKKVAARMGDLVLPVAAAAVPPLQAHQPSS
MGPSVASELARICIGLGMAPPDFTFIRSRQGLMVCQVKLSSGLLVHGPQSHSENEAKEKA
ALFALQRLVSVNSVGSGFPMPPPLFSGVGQIRGSPMGPMPNVFGQSGGLLIPPQGYGPLH
WGMPHQGQPFYGGTFPGSRPQTPSAPIGSHNQFVPLQVTKKRVSSGKKPQEFYNAAHTAR
NQAPINKAQSDSQPSLSPTPSAPPAAPITPPKTAQDPPEMAGTPSTPQTPRQNPTPGHGH
TPSSASKRKHRKLAVNFEVAKVQE
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccaaaattctaccgatggatttcagagcgatacccttgcctgagtgaagtt
gtcaaggaacatcagattccagagtttgacaacctctacctggatatgaatggcatcatc
caccagtgctcccacccaaatgacgaggacgtccacttccgtatctcggaggagaagatc
tttgcagacatcttccactatctggaggtgctgttcaggatcatcaagcccaggaaggtg
ttcttcatggccgtggatggggtggctcctcgggccaagatgaaccagcagagaggcagg
agattcaggtcggccaaagaagcagaggacaagataaagaaggccctagagaaaggagag
gtcctaccctctgaggcccgctttgactctaactgtatcacacctgggacggacttcatg
gccaggttacaggagcagctcaagtactttgtcaacagtaaactgtccacagacaatgcc
tggaaaggagttaacgtctacctttctggacacgagactccaggagaaggagaacataag
atcatggagtttatccgctgggaaaacaccaagccagaccacgacccaaacacacgccac
tgtctctatggcctggacgctgacctgatgatgttaggtctgacgagccacgagccacac
ttctccctactcagagaagaggtccgctttggagggaagaaaaaccagaaaagaataact
gctccagaggagacaaccttccacctactgcacctgtcactatttagggagtacatagac
tacgagttctctgaagttaagaataagatctcatttgagtacgacctggagcgaatcata
gatgactggatcctgatgggctttcttgttggaaatgacttcatccctcatcttcctcat
cttcacataaaccacgacgccctgcctcttctctaccgcacctacatcagtgtgctgcca
acactaggaggatacctgaatgagaatggtcacctgaacctgggtaactttgagaagtac
ctggagaaactgtcagagtttgacagggagcacttcaatgaggtgtttgtggatctgaag
tggtttgagagtaaggtggggaacaagtacttgaacgaggcagcagggctggcagcagag
gaggctcactgcaaggattccaggaagaaagacctgaaagactctctgtgtctggctgca
ctggatgaggtcaaggacagaggccccagcagaggttttgaggaggaaggggaggaagaa
gacatgtttgaagcagagttccgacagtacaaacgcacctactacatgaccaagatggga
gtggaggtggtctcagatgagtttctagccaaccaggcgttgtgctatgtggagggaatc
cagtggatcctacattactactaccatggagtccaatcctggagctggtattacccgcac
cactatgcccccttcctgtcagatgtgcggaacatagcccatctgaagttgaactttgac
atgggcaagcccttcatgcccttccagcagctgctgggagtcctaccttctgccagcaaa
gacctgctgccccagagctataggcacctgatgacatcagagaattctagcatcattgag
tattaccctctagacttcaagacagaccttaatgggaaacaacaggagtgggaggctgtg
gtgctcatccccttcatcgacgagagatgtttgcttgctgcgatggagccttataacgat
cacatgaccaaggctgagaaggcccgtaactgccacacacagtgtgctgtgtacagctac
gacgctgagctagactacccctccaccctgcctgacctgttccccaacatcatgcactgc
catgtcagagtgacaccggttcccatggacgcttggcacgtgtcgttgagccatgtgggg
cgcagcatcaacagcagccagttctacttctgtggcttccccaccttaaagcacatcaga
cacaagttctataagaagaaacatggagtggtggtgttccagcagagcagccgaggagag
aacatgatgctggagatcatacctagcaaagaggaacccgtgtgtgacaatgtggcctct
caggtcctgggtcggtctgtgtttgtcaactggccccacctagaggaggccagggtggta
gcagtgtctgacggggagagcaagttcttcctggaggagccggcagggatgcagaagctg
tacgacagggactctcctccccccactaaggtcacctacctcagtgacaaggaacagaag
gactgggttaaggatgtacagggcatcactgagcatttcggtaagcgtaagggcatcacg
gtgaatgagacggcggtggttttgtatacccagctgctgacgggcaggaagtatgtacct
gggcagagcggacaggtgcacctggagaaacagtgggccaagcagatactgccattcccc
taccagaccatcgtcaaggacatcaaagcctttgactcgtcgtccactcgcttcaagacc
ctggaggagctgtatcccccgacgaccacggttttcatggtggggaacccctactacggt
gccatgggagaggtgcaggagtccagtgatgtcatcaaagagggacgggtgcgggtagtg
ttcacggtgccctgtgaaccacctatggaatccttaatacagaaccagcataaatactgt
gtgaagtacagtcctggctacgttctggcctcacgcctcggcatcaccggctacctcgtc
tccagattctctggcagcatcttcgtcggcagaggatccaagaaaaatccccatggggag
cagaaggctaacgtgggtctgaacctgaagttcaataagaagaatgaggaggtaccaggt
tacaccaagagaaccgagaaggagtggctctattctgtcgctgtggaggatctgatggct
gagtacttggataggttctctgaggtgtttgacctggtgtccaggaacagtcacgacgat
gtcttctacgaggacgacatctggcccggagtggaccaaaacggggcggagagggtgaag
gagatcacttcctggttgaagacccacccagtcgccgacatcgcccgggcatcatgtgac
ctgcagatcctggacacggccatcgtggagcagatcgaggaagtggtggctaaggtcaag
aagagcagcaagaaagtgcgtgtgaccgtgaagccacatttactcttcaggcccttagag
cagcagcacggtgtggtccctgacccggatgcagagtaccacctgtttgaccgggtggtc
aatgtcagagagagcttctcagtccccctcggcctcagaggaaccatcatcggcatcaag
ggagctgatcgggaggctgaggtcttgtatgaggttgtgtttgatgaagagtttgctggg
ggacttacaatcaggtgtgcgtcgggccgtggctacaggctgcctccgtgtgccttaatc
aacttgagccatggatgccgctttgagcagggttcccacaaactgaccgccatcgtcaag
ccccagccctcctcccaccaccacgcacacaacaaagagctgtctgggctcaaccactca
ccacgctcacccttcatacccacaccgcagcagaacggcagacaaaacattctcagggaa
gacactcaggggaacaaaaatgtgcaccacaatgccctcagccagaaacaccagccgaag
ggtaaagatgaggagttcagtaatgtgtggcagtctctgcagagttcaggaatgccccag
aaaccaccagcccactggcaacaaaacaatgcgtgtaattctgcctggggtccagggtct
cccggacaggaagggcagttccaggggcaacagggcaggaaccaaccccagagtcaacaa
caacaaccccccaaacctggcccagcaggaagtatcagactgctgaagagaaatgaagat
gtcaacactctgtttcccgctcagaacgccacaaagaagcaaacagagtttgaggacttg
atcgccaacctgaagatcaccaagggcaatgagccaactgcaccgcctccaggcaaccag
ccaacgagccaatcggaggagccgctgtctccgcagtcattcgctatgaaggggactctg
gccctgaaggagatgctgaacattggctctgtccctgactccactagtctctcctcctcc
aacacacagcagcagaacaggagaagagccaccaagaaagtggcggcgaggatgggagac
ttagtgttacctgtggccgcagcagcagtccctcccctgcaggcccaccagccctcctcc
atgggtcccagtgtggcctcagagctggctaggatctgtataggtctgggcatggcccca
cctgacttcaccttcatacgcagcagacagggtttgatggtgtgtcaggtgaagctctcc
agtggtctgcttgtccacggtcctcagagtcactctgagaatgaagccaaagagaaggca
gctctcttcgccctgcagcgccttgtgagtgtgaattcggtgggttctgggtttcccatg
cctcctcctctgttctccggggtcggccagataagaggatcgcccatgggacccatgcct
aacgtattcggccaatcaggtggtctgttaatccctcctcaggggtatggtcctctccac
tggggcatgccccaccagggacagcccttctacggtggcaccttccctggctcccggccc
cagacaccctccgcccccatcggctcacacaaccagtttgtccccctgcaggtgactaag
aagcgcgtgtcatcaggcaagaagccacaagagttctacaatgcggctcacacggcgaga
aaccaagctccaattaacaaagctcagtctgactcccaaccctccctatccccgaccccc
tcggcaccccctgcagcccccatcacacccccaaagaccgcccaggacccccctgagatg
gctgggaccccctccacgccacagacgccacgccagaaccccaccccaggccatggccac
acccccagctctgcctccaagaggaaacacaggaaactggcggtcaacttcgaagtggcc
aaagtccaagaatga
DBGET
integrated database retrieval system
