Salvelinus fontinalis (brook trout): 129824018
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Entry
129824018 CDS
T11136
Name
(RefSeq) tenascin-R-like isoform X1
KO
K06252
tenascin
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04510
Focal adhesion
sfon04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129824018
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129824018
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sfon00536
]
129824018
Glycosaminoglycan binding proteins [BR:
sfon00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129824018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129824018
NCBI-ProteinID:
XP_055739261
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Position
26:26446366..26610210
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AA seq
1369 aa
AA seq
DB search
MGPARGWLLGLVLLLLGTQAALSPSGEEGKLVRTIRVRRQAPSDGPTSQSNNQTIKEQPM
VFNHVYNINVPLESLCSVDLDSAVPPPSQATRGAVSSGGGEGATEFTEQTVDADSQVTFT
HRINIPKQACACPTANIVQQLAIRIEMLEREVLLLRAQCSSGNCGCGESSSMGHLDFIPQ
CSGHGSFKMDLCGCVCEDSWTGKNCSEPRCPDDCSGQGVCMEGECVCDSDFGGDNCSEPR
CPADCSGRGLCMDGECICEENFTGEDCTLGRCLNDCSDQGLCTNGTCQCRPGYVGEDCSL
AYCANNCSQKGICKEGFCVCQDGFAGEDCSAVAPALNLRMRGVTEHTIDLEWEGSVLMTD
YLVTYVATSPGGVQLEIRIPGNTTSCSIPDLEPGIEYNINVYAVLNNVISAPTNTQVSTY
LSNPDGLLFKSITETSVEVQWQPFYYSFDGWEISFIPKDNDGGMTAQLPSTITSFHQTGL
RPGEEYTVNLVALRDQGRSQPVSATVTTLIDGPTQLIVRDVSDSVAFVEWTNPKAKMDQI
VLRYGLVGGDRPKTTFRLQPTLSQYSLQMLRPGSRYEVSISGVRKGNESGTISTEFSTVL
VFLSEIDAPKNLRVLSKFSTTLELEWDNSEAEVEGYQVVYSTLAGDQYEKVIVPLNDGPT
SKTTLTNLLPGTEYGIGISAMLGTNQSSPATMNARTGLDVPMDLTVTASTDNTITLLWGV
VQGPIDHYMVTYTSSSGLTTEVTVPKDVTTTTLNDLEPGTEYTITVAAHRGRQQSTAATI
DGFTGSRPIIALYLSDVTWDSVTVAWSAPAPPADLYILTYSSEDGTDTSKVTLDGSKTRS
SIKGLLPSTEYTVSLITIHGEVKSEAVTATLTTGMDPPKEMTVSYATEDSVIISWLRPFA
PFDYYKMSYQSARGTVDSVVIDNDVTNYTLSSLHPATEYEINLNVVRGSQESKSITTSVF
TAMDMPMELTALNITPQGALLRWNPPLSSVDNYVFTLTCNQVTANTFLVEGVKQDHQLSK
LKPSTTYSVALYATKGPLTSGTVIANFETPMDAPLNLTASEVNHRSALISWQPPIADIDN
YMLTYKSVDGNRKELILDAEDTWIRLEGLAETTEYTVRLQAARGLETSGIVSTAFTTGNR
LFATPQNCAQHLLNGESLNGVYTIYINRDANQGVQVYCDMTTDEGGWIVFQRRQNGLTDF
SRKWSDYRVGFGNLEDEFWLGLDNIQKLSAQGRYELRIDMKDGQESVYASYDKFAIGDAR
NLYKLRIGEYNGTAGDSLSYHQGRPFSTKDRDNDIAVTNCALSYKGAWWYKNCHRANLNG
KYGESRHSQGINWYHWKGHEFSVPFVEMKMRPFNYRSISGKRRRSTPPE
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgggccctgcacgaggctggctgctgggcctggttctactccttctggggacccaggct
gctctatccccgtccggtgaggaggggaagctggtccggaccatcagagtcagacgacag
gcaccttcagatggccccaccagtcaatctaacaaccagaccatcaaggagcagccaatg
gtcttcaaccatgtgtacaacatcaacgtgcccctagagtctctgtgctcagtggatctg
gattcagcagtgcctccacctagccaggccactagaggggctgtgtccagtgggggtggg
gagggcgccacggagttcacagagcagacagtggacgcagacagccaggtcaccttcacc
caccgcatcaacatccccaaacaggcctgcgcctgtcctacagccaacatcgtgcagcag
ctggccatccgcatcgagatgttggagagagaggtgttgctgctgagagcccagtgcagc
tctggcaactgtggctgtggggagagttcatccatgggtcacctggacttcattccccag
tgcagtggccatggcagcttcaaaatggacctgtgtggctgtgtgtgtgaggacagctgg
acgggcaagaactgctctgagccgcgctgcccagacgactgctccggacagggagtgtgt
atggagggtgagtgtgtgtgtgacagtgacttcggaggggacaactgctcggagccccgc
tgcccggcggactgctccggtcgagggctgtgcatggacggggagtgtatctgtgaggag
aacttcactggagaggactgtacactgggtcgctgcctcaatgactgctctgaccagggc
ctgtgcaccaacggaacctgccagtgtcgcccgggatacgtaggagaagactgctccttg
gcctactgcgccaacaactgcagtcagaagggcatttgtaaagaaggcttctgtgtctgc
caagatggcttcgctggagaagactgctctgcagtggctccggctctgaacttgcgcatg
cggggagtgacggagcataccattgacctggagtgggaggggtcagtgttgatgacggac
tacctggtcacctacgtggccaccagcccaggtggggtccagctggagatcaggatccct
gggaacaccacctcctgcagtatcccagacctggagcctggcatcgagtacaacatcaac
gtctacgctgtgctcaacaacgtcatcagtgcccctaccaacactcaggtgtcaacctat
ctctcaaatccagacggtttactcttcaaatccatcacggagacatccgtggaggtgcag
tggcaacctttctactactcatttgatggctgggaaataagcttcattcccaaggacaat
gatggagggatgacagcccagctacccagcaccatcacttcgttccaccagacaggcctg
aggccaggggaggagtataccgtcaacctggtagctctgagggaccaaggccgcagccag
cctgtatccgccaccgtcaccacattgattgatgggccgacacagctgatagtgcgtgat
gtctcggactctgtggccttcgtggagtggaccaatcccaaggcaaagatggaccagata
gtgctgcgttatggcctggtaggaggggacaggcccaagactactttccgtctgcagccc
accctcagccagtactccctgcagatgctgaggccaggctcgcgctatgaggtgtccatc
agtggtgttcgcaagggcaatgagagtggaacaatctccacagaattcagcaccgttctg
gtgttcctctcagagatcgacgcccccaagaacttgcgagtgctgtccaagttctccacc
accctggagctggagtgggacaacagcgaggcggaggtagaggggtaccaggtggtctac
agcaccctagcaggggaccaatacgagaaggtcattgtcccactcaacgatggacccacc
agcaagaccacactcacaaacttgttgccaggtacagagtatggcattggcatatcggct
atgcttggcaccaaccagagttctcctgccacaatgaacgccagaactggtctggatgtc
ccaatggacctgactgtgacagcgtccacagacaacaccatcaccctgctgtggggggtg
gtccaggggcctatcgaccactacatggttacctacacctcctcatctggcctgaccacg
gaggtgaccgtccccaaggacgtgaccaccaccacgctcaatgacctggagccaggcaca
gaatacaccatcactgtagctgcccataggggaaggcagcaaagcactgcagccaccatt
gatggcttcacaggctcccgccccatcatagcactctacttgtctgatgtcacatgggac
tcggtgacggtggcatggagcgcccctgccccacccgcagacctctacatcctcacctat
agctctgaggacggcactgacacgtccaaggttaccctggatggatccaagacccggtcc
tctatcaagggactcctgccctccacagagtacaccgtcagccttatcaccatacatgga
gaggtgaagtctgaggctgtcacagccacgctcaccacaggaatggatccacctaaagag
atgactgtgtcatatgccactgaagactccgtcatcatatcatggttgagaccattcgct
cccttcgactactacaagatgtcctatcaatcagcaagagggacagtggacagcgtggta
attgacaatgacgtcactaactacaccctgtccagcctccacccagcaacagagtatgag
atcaacctgaacgttgtgcggggcagccaggagagcaagtccatcaccaccagtgtcttc
acagcgatggacatgccaatggaactaacagccctcaacattaccccacaaggagcttta
ctccggtggaaccctcctctgtccagcgttgacaactacgtgttcaccctcacctgcaac
caggtgacagctaataccttcctggtggaaggtgtgaaacaggaccaccagcttagtaaa
ctcaagcccagcaccacttactctgtagccctctacgccaccaagggacccttgaccagt
ggaaccgtcatcgccaactttgaaacacccatggacgctcctctgaacctgacggctagc
gaggtgaaccaccgcagtgccctcatctcctggcaaccgcccatcgcagacatcgacaac
tacatgctcacatacaagtcagtggacggcaacagaaaggagctgatcctggatgccgag
gacacttggatccgtctggaggggctggcagagaccacagaatacactgtgaggttgcag
gctgccaggggattagagaccagcggaatcgtctctacggccttcacaacaggaaaccgt
ctgtttgccaccccccagaactgtgcccagcatctgctgaacggggagtccctcaatggc
gtctacaccatctacatcaacagagacgccaatcagggagtgcaagtctactgtgatatg
accacagacgaaggaggttggatcgtgttccaacgtcgtcagaacggcctgacagatttc
tccaggaaatggagtgactacagggtcggctttggaaacctagaggatgaattctggctc
ggtttggacaacatacagaagctctcagctcaaggtcgctatgagctccggatcgacatg
aaggatggccaggagtctgtctacgccagctatgacaagttcgccattggagacgccagg
aatctgtacaaactcaggataggagagtacaatggcacagctggggactcgctgagctat
caccaaggccgtcccttctccaccaaggacagagacaatgacattgccgtgaccaactgt
gctctgtcctacaaaggagcctggtggtacaaaaactgccatcgggccaacctgaacggg
aaatacggcgagtcgagacacagtcagggtatcaactggtaccactggaagggccatgag
ttctctgtcccctttgtggagatgaaaatgaggccgttcaactaccgcagcatcagtggc
aagcgaaggaggtccactcctccagaataa
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