Salvelinus fontinalis (brook trout): 129824258
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Entry
129824258 CDS
T11136
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03013
Nucleocytoplasmic transport
sfon03015
mRNA surveillance pathway
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129824258
09122 Translation
03013 Nucleocytoplasmic transport
129824258
03015 mRNA surveillance pathway
129824258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129824258
03041 Spliceosome [BR:
sfon03041
]
129824258
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129824258
Spliceosome [BR:
sfon03041
]
Complex C
Other components
EJC/TREX
129824258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
Motif
Other DBs
NCBI-GeneID:
129824258
NCBI-ProteinID:
XP_055739741
LinkDB
All DBs
Position
26:complement(37468951..37496575)
Genome browser
AA seq
2076 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLPKSGQKNALIKRLKGALMLENLQRTSHHH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEKEAREAVEDDDTDQEDHSQGNNSSA
CAAPDQDDVPVLVDQHKPLGPSEGEGLAGPASEGEGHRAKDGHVSGPPASTLPTSAPAAV
ASLSVCVADGEQRPERVPTSSQVPADSDDDSDGGDEDGEDEDWDSGARRRNLGEPPRGQL
ARERSEGSRQPPQHIPPLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPGELPARQRT
SSTSSSGSSSSGSRSSSPEPQSNAERKPGPLTLLARKMASEGAFSGVGWHERGEAERQDN
NAATATIFPGRGPQEGTVSAITHTANAAASLPFPSLIPVTNQGVLGGHLSHSQVPVSVLR
PTIMEERDSAWQQENKERELQAESERDKALEQERLRAVELERQGIFEQQRAMEQERERAL
EREREKALEAERKERERALERERVQDLEQEREEREKALAEEREKSVARERALELEKEKAV
ELERQRAMEREQALQQEREERERAKVFEREERERALEREQVLEQKRVETARVLEQERVER
EKALERERQERERALEREQLEREKALEMERIEREKALEQERVEKEKALELVRQKALKREQ
EERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALALELE
RQKALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKA
LELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELE
RQKALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKA
LELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELE
RQAALELERQAALELERQAALELERQAALELERQAALELERQAALELERQAALELERQAA
LELERQAALELERQAALEQERVEKEKALELERQKALELERQKALELERQKALERELEERE
KDREEKARALHQEIIEREKALEKERAMEKERVEREKALEREREEKERALEQKALQREKEE
RESVFEQDKERAMVAEGESHLAPWKRGREIGLTPLPTPPLSTGAGRMAATEEGGEPHVPS
LPQTASRDNQPAESGTPLSPTIATPLSPQSSFKKFRFLRDPPVLSPSCSASLVIKRPRTF
SDSPHPQASALQSPRKSGEQEQESTLQGPKLSAGQAASQMPARQGFLVSGPTAADTSDTT
RPETPVIATPGKSPEEEKVKALVSEEHVLADKETNKQEVGEIARGTKGVDAGNVPSGPAG
SVVPPSSPPEEGNVDRGRERSQKKQEKRGRRASSSSDSSDSDSGSSSSRSSGSSSSSQGK
TRTTPSGRKPEKPQTRTISQDKETVSQFEESKELSKAPQRKNRVSGEKDMTIDGARHGKK
PFVGIPAGQVNEQKKDSEGEEEMTDTTREVKEAAMAEPERAPESSEESLTPKAFTARRIS
LSSSKASPGVVSAEGEAESGAGPGRKRRWGSSTAVTARKLSISITTDSLKSLIPDIRLSP
GQEAVVDLHPEETHLSGGEEDREQGEQDFKIRRTVTQVVLSETQENGPMESKRSENMEDR
EDGVEVKSDREEKMDDSFQRDSIETRSPSPPIHDMEMNTVTPSDTLIRRSISQQKSGVSI
TIDDPVRTAKQPSPPRGKVSNIVHLSNLVRPFTLGQLKELLSRTGTVQEDGFWIDKIKSH
CYVTYSSAEEAVATRAALHGVKWPQSNPKFLSVDFSQQEELDFHRGLPPPGGAGEEERGA
SSVPGRGRGAALPPLLPERDQWAEREREMERRERTRAEREWDRDKVRDFGPGKPGEEAGP
RRSRSRERKRKERKTDKKEKAAEEAPAKLLDDLFNKTKAAPCIYWLPLTEEQFTQREVAR
QERRKEREKRRKEQQEEEEKKREEERKDKIKAGSSVSGERGEGDRERDRERGKDRDRDRE
GDKRRESSHRRPGGNSAGVGRRSRSRSDPPPRDRRR
NT seq
6231 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacactggacgggaggccgctacaatctctacgggtggcg
gatttgaaagctgctttggaggagcgggggcttcccaaaagcggacagaaaaatgctctc
attaagaggctcaaaggggctctcatgctggagaacctccagagaacctcacaccatcac
ataggactgcagccaaactcccagattggtgaagagatgagccagaatagcttcattaag
cagtatctggccaaacagcaggaactcttgaggcagcgtcttgagaaagaggcccgggaa
gcagtcgaagatgatgatacagaccaagaggaccactcacagggcaataacagctctgcc
tgtgctgccccagaccaggatgatgtacccgtgttggttgaccagcacaagccacttggc
ccctccgagggagagggactagcaggccccgcaagcgagggagagggacacagggccaaa
gacggccatgtgtctggtccacctgcctctaccttgcctacctctgcccctgctgccgtt
gcctctctgtctgtgtgtgtagctgatggtgagcagcgcccggagagagtcccaacctct
agccaagtcccagcagatagcgatgatgacagcgacggaggtgacgaggatggcgaggat
gaggactgggatagcggtgccaggaggaggaatctaggagagccaccaagaggccagcta
gcaagagagaggtctgaaggatcccgccaacccccacagcacatcccccccctgttgtct
ccgcagcttcgacagcctacccctcctccctcccctcccccagagttatcattcccactg
cctgatacccctaaacaaagcccccctagtccaggtgagctcccggctaggcagcgtact
tccagtacctccagctctggctcctctagcagtggcagtcgtagtagcagtccagaacca
caaagcaacgcagagcgcaagcctggcccactgaccctgctggcacgcaagatggcatca
gaaggcgctttctctggagttgggtggcatgaacgtggggaggcagaaaggcaggacaac
aatgctgcaactgcaacaatatttcctggtagaggtcctcaagagggcacagtgtctgcc
atcacccacacagccaatgctgcagccagtttgcccttccccagtctgattccagttacc
aaccagggtgtccttggaggccatctatcccacagtcaagttcctgtgagtgtgcttagg
cccactataatggaagagagagattctgcatggcaacaagaaaacaaggaaagggagctg
caggcagagagcgaaagagataaggcccttgagcaagagagacttagagccgtggagctg
gaaagacagggaatatttgagcaacagcgtgccatggagcaagagagggaaagagctttg
gaacgagagagggagaaagccttggaggcagaaaggaaggagagggaaagagctttggag
cgagagagggtgcaagatcttgaacaagagcgggaggaaagagagaaagctttggcagaa
gagagagagaagtctgtggcaagagagagggcccttgagcttgagaaagagaaggctgtg
gagttagaaaggcagagagccatggaacgagagcaagctttgcagcaagagagagaggag
agggaaagagctaaagtttttgaacgggaggagagggaaagggctcttgagcgggagcaa
gttcttgaacaaaaaagggtggagacagcgagagtgttggagcaagaaagggtggagagg
gagaaagccttggagcgagagagacaggaaagagagagagccttggagcgagaacagttg
gagagggagaaagcattggagatggagcgtatagagcgggaaaaggctttggagcaagag
cgagttgagaaggagaaagctttagagctagtgaggcagaaagctttgaagcgggaacag
gaggagaggcagaaagcgctggagctagagaggcagaaagcgctggagctagagaggcag
aaagcgctggagctagagaggcagaaagcgctggagctagagaggcagaaagcgctggag
ctagagaggcagaaagcgctggagctagagaggcagaaagcgctggcgctggagctagag
aggcagaaagcgctggagctagagaggcagaaagcgctggagctagagaggcagaaagcg
ctggagctagagaggcagaaagcgctggagctagagaggcagaaagcgctggagctagag
aggcagaaagcgctggagctagagaggcagaaagcgctggagctagagaggcagaaagcg
ctggagctagagaggcagaaagcgctggagctagagaggcagaaagcgctggagctagag
aggcagaaagccctggagctagagaggcagaaagcgctggagctagagaggcagaaagcg
ctggagctagagaggcagaaagcgctggagctagagaggcagaaagcgctggagctagag
aggcagaaagcgctggagctagagaggcagaaagcgctggagctagagaggcagaaagcg
ctggagctagagaggcagaaagcgctggagctagagaggcagaaagcgctggagctagag
aggcagaaagcgctggagctagagaggcagaaagcgctggagctagagaggcagaaagcg
ctggagctagagaggcagaaagcgctggagctagagaggcagaaagcgctggagctagag
aggcagaaagcgctggagctagagaggcagaaagcgctggagctagagaggcagaaagcg
ctggagctagagaggcagaaagcgctggagctagagaggcagaaagcgctggagctagag
aggcaggcagcgctggagctagagaggcaggcagcgctggagctagagaggcaggcagcg
ctggagctagagaggcaggcagcgctggagctagagaggcaggcagcgctggagctagag
aggcaggcagcgctggagctagagaggcaggcagcgctggagctagagaggcaggcagcg
ctggagctagagaggcaggcagcgctggagctagagaggcaggcagcgctggagcaagag
cgagttgagaaggagaaagctttggagctagagaggcagaaagctttggagctagagagg
cagaaagctttggagctagagaggcagaaagctttagagcgggaactggaggagagggag
aaagatagggaggagaaggcaagggctttgcaccaagaaataattgaaagggagaaagcc
cttgagaaagaaagagctatggagaaagaaagagtggagagggaaaaagctttggaacgt
gagagagaggagaaggagagggctttagaacagaaggccctgcagagagaaaaagaagag
agggagagtgttttcgaacaagataaggaaagggctatggtggctgagggggagagtcat
cttgctccatggaaacgtggtcgtgagattggtcttacccccctgcccactcctcccctc
tccacaggagcaggtagaatggcggcaacagaggagggtggggagccccacgtgccatct
ctaccccaaacagcatcgagagacaaccagccagctgaatctggtacgcccctgtcacca
actatagcaacgcctctgtcaccccagtcctccttcaagaagttccgtttcttgagagac
cccccagttctgtccccatcttgctctgcatccctggtcatcaagaggccccgtacattc
tctgacagcccccatcctcaggcctcagctctccagtccccaagaaaatctggggaacaa
gagcaggaaagtactctgcaggggcccaagctttctgctggacaggcagcatcacagatg
cctgcaagacaggggttccttgtttctggaccaactgcagcagacacgtcagacacgacc
aggccagagaccccagtgattgccacaccaggaaagagtcctgaagaagaaaaggttaag
gcgcttgtgtcagaggagcatgtcctagcagataaggagacaaacaaacaggaagtggga
gagatagccagaggcactaaaggggtggatgcaggaaacgtcccctcgggtccagcagga
tctgtggtacctccctcatccccaccggaagagggcaatgtagaccggggaagggagaga
agtcaaaagaaacaagagaagcggggaagacgagcgtcctcatctagtgactcctcagat
tctgactctgggtcatcctcctcacgttcgtctggttcatcttcgtcctcccagggcaaa
acccgcaccactcccagtggtagaaagcctgagaaacctcagacaagaaccatatcccag
gataaggagacagttagtcaatttgaggagtcaaaggagttatcaaaagccccccagcgc
aaaaatcgagtatctggggagaaggacatgaccatcgatggagccagacacggcaagaaa
ccgttcgttggaatacctgctggacaagtcaatgagcagaagaaggacagcgagggagag
gaggaaatgacagacactacaagggaggtgaaggaggctgccatggctgagcctgagcgg
gctcctgagagcagtgaggagagtctgacgccaaaggcattcacagcccgtaggatctcc
cttagcagcagcaaggcctctccaggtgtcgtcagtgcagagggcgaggcagagtctggg
gctgggcccgggaggaagaggaggtggggttccagcactgcagtcacagccaggaaacta
tccatcagcatcaccacagactctctgaagtctctgatcccagacatcaggctgagtcca
ggacaggaggcggtggtggatctgcacccagaggaaactcacctctctgggggagaggag
gacagggagcagggcgagcaagacttcaagatcagacgcactgtcacacaggtggtcctg
tccgagacccaggagaatggaccgatggagtccaagaggagtgaaaacatggaagacaga
gaggatggagtggaggttaaaagcgacagagaggagaagatggacgactcattccagaga
gactccatagagacacgatccccctctccccccatccatgacatggagatgaacacagtg
accccaagtgacaccctgatccgtcgctccatcagccagcagaagtctggcgtgtccatc
accatagacgaccctgtccgcacagccaagcagccctctcctccacgaggcaaagtgtcc
aacatcgtccacctgtccaacctggttcggccgttcaccctgggtcagctgaaggagctg
ctcagcaggactggcaccgtgcaggaggacggcttctggatcgacaagatcaaatctcac
tgctacgtcacctactccagtgcagaggaggcagtggccactcgtgcagcactacatggg
gtgaaatggcctcagagcaaccccaagttcctcagtgtggacttcagtcagcaagaggag
cttgacttccacagaggcttgccaccccctgggggggctggagaggaggagcggggggct
tcgtcggtgcctggccgaggtcggggggcggccctgccccctctcctgccagagcgtgac
cagtgggcggagcgagagcgtgaaatggagcgcagggagaggacccgggcggagagggag
tgggacagggacaaggtccgggactttggtcccggaaaacctggagaggaggcgggcccc
agacgatcgcgctccagagagaggaagcgcaaggagaggaagacggacaagaaagagaaa
gctgcagaggaagcccccgccaaactgctggatgacctgttcaataaaaccaaagcagcc
ccttgtatatactggctccccctcacagaagagcagtttacacagagggaagtagctcga
caagagaggaggaaggagcgagagaagaggaggaaggagcagcaagaggaggaggagaag
aaaagggaggaagagcgcaaagataaaataaaagcagggagtagcgtatcgggcgaaaga
ggcgagggagacagagagcgagacagggagaggggcaaagacagggaccgagacagagag
ggtgacaaacgcagagaaagtagccaccgcagaccagggggcaacagtgcaggggtgggc
agacgctctcgcagccgcagtgatcctccacctcgtgacagacgacgctag
DBGET
integrated database retrieval system
