Salvelinus fontinalis (brook trout): 129824477
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Entry
129824477 CDS
T11136
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129824477
09123 Folding, sorting and degradation
03018 RNA degradation
129824477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129824477
03041 Spliceosome [BR:
sfon03041
]
129824477
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129824477
mRNA degradation factors
5'-3' decay
Lsm complex
129824477
Spliceosome [BR:
sfon03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
129824477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
GPAT_C
Motif
Other DBs
NCBI-GeneID:
129824477
NCBI-ProteinID:
XP_055740155
LinkDB
All DBs
Position
26:complement(46843886..46851353)
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AA seq
111 aa
AA seq
DB search
MADRNQDRNKEGEKKKKESIFDLSKYIDKQIRVKFQGGREASGVLKGFDPLLNLVLDSTI
EYLRDPDDQFKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
336 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagaaaccaggacagaaacaaggaaggagagaagaagaagaaagagagtatc
tttgacctgtcaaagtacattgataaacaaatccgtgtgaagtttcagggaggacgagag
gccagtggagtcctgaaggggtttgaccccctgttgaacctggtattggacagcaccatc
gagtacttgcgggatcccgacgaccagttcaagttgactgaggacacgcggcagctgggc
ctggtggtttgtagagggacgtccgtggtgctcatctgtcctcaggatggcatggaagcc
atccccaaccccttcatccagcagcaggacggatag
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