Salvelinus fontinalis (brook trout): 129824995
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Entry
129824995 CDS
T11136
Name
(RefSeq) collagen alpha-1(X) chain-like
KO
K19479
collagen type X alpha
Organism
sfon Salvelinus fontinalis (brook trout)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
129824995
NCBI-ProteinID:
XP_055740595
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Position
27:9881332..9887672
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AA seq
661 aa
AA seq
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MDLRVTSVLLLLVALAVATPERYYHVQKVAKQQQHYPTKSHVQTVSGEPGIPGSPGEPGP
MGPPGPPGNNGVGHTGQQGPPGAPGPAGYSAAGKPGNPGGPGKPGSNGMPGEKGHTGATG
AMGPRGPPGSPGSPGPAGYSSAGKPGPHGLPGGMGPRGESGLKGHPGIPGLQGQKGERGV
GIPGAPGANGQVGPMGPSGMPGQPGVGKSGAPGYPGESGKSGTPGRDGAPGAMGQPGPKG
HNGNPGVGAPGKSGENGSPGMPGNMGPKGPQGHAGQPGAPGLPGVGKPGANGMPGDRGSP
GTSGTTGQKGEPGPTGYTGATGATGLMGPAGPQGARGFQGEPGMQGSKGDVGMLGAPGAK
GTKGDQGHQGYAGKAGIPGAAGPAGATGATGHQGNKGAQGHTGSPGQPGSNGLAGAKGHP
GTPGGPGKPGESGIPGTRGPVGPSGPAGQAGLRGHAGLPGAPGPAGQMAKGMSGPMGPPG
APGSRGHDGNPGAMGPPGPPGPPGEMVYQHEKSMPIKSHEIMMPHEMMKAPMSAFSAVLT
MAYPSAGSPVPFNQIIYNGEQHYDPQTGIFSCQVPGLYYFSYHMHVNGANALVALYKNGE
PIMFSYDEYNKGFLDQLSGSTVLMLNAHDQVYIQVPDEETNGVFAAENVHCSFSGFLIAS
T
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggacctcagagtgacaagcgttctcctcctcctggtggccttggccgtggcaacacca
gagagatactaccatgtacagaaagtagccaagcagcagcagcattatcctactaagagc
catgtgcaaactgtttcaggtgagccaggtattcccggatcccctggtgagccaggacct
atgggcccccctgggcctcccggcaataacggcgtgggacatactggacaacagggccca
cccggggcccccgggcccgctggctactccgcagctggcaagcctggcaatccaggtggt
cctgggaaaccaggtagtaatggaatgcccggtgagaagggtcatactggtgcaactgga
gccatgggtccaagaggaccccccggttcccctggaagcccaggacctgctggatactct
tctgctggcaaacctggcccacacggtctgcccggaggcatggggccaaggggtgagagt
ggacttaaaggacatccaggtatccctggtctgcaaggacaaaagggagagaggggagtt
ggtattcctggggcaccaggtgcaaacggtcaagtgggcccaatgggaccctctggtatg
ccagggcaacccggagttggtaagtctggtgcccctggataccctggggagtctgggaag
tcaggtactccaggtagggatggagctccaggagctatgggtcagccagggccaaagggc
cacaatggaaaccctggggtaggagcaccaggaaaatcaggtgagaatggcagtccaggt
atgcctggaaatatgggacctaaaggtccccagggacatgccggacaaccaggtgcacct
ggcttaccaggagttggtaaaccaggagctaatggcatgccaggtgacagaggatcaccc
ggtacatcaggaaccaccggtcagaaaggagagccagggccaacaggttacactggggca
acaggtgctactggccttatgggtccagctgggccacagggtgctagaggattccaggga
gaaccaggtatgcagggatctaaaggagatgtcggcatgctgggagctccaggggcaaag
ggaaccaagggggatcagggacatcagggttacgcagggaaggcaggtatccccggggca
gcaggcccagctggtgcaaccggcgctacaggacaccagggtaacaagggagctcagggc
catactggctctcccggtcagccaggttcaaatgggcttgcaggagcaaagggacaccca
ggcactcctggaggcccaggaaaaccaggcgagagcggcatcccaggaacaagaggacca
gtggggccttcaggtccagcaggtcaagcaggtcttaggggtcacgcaggtcttcccggt
gcacccggcccagctggccagatggccaagggaatgtctggtcctatgggtccacctgga
gctcctggttccagaggtcacgatggtaacccaggtgctatgggacctcctggcccacct
ggtccccctggtgagatggtctaccaacacgagaagagcatgcccatcaagtcccatgag
attatgatgcctcatgagatgatgaaggcccctatgtccgccttcagcgctgttctgacg
atggcttacccatctgcgggttcacccgttccattcaaccagattatttacaatggggag
cagcactatgacccccagactggcatcttctcctgccaggtaccaggtctctattacttc
tcctaccatatgcatgttaacggcgctaatgcattggtggcactgtacaaaaatggtgag
ccaatcatgttctcatacgatgagtacaacaagggcttcttggatcagttatctggcagc
actgtacttatgctgaatgcccatgaccaagtctacattcaggtccctgatgaggagacc
aatggtgtctttgctgctgaaaatgttcactgctctttctctgggttcctgattgcctca
acgtga
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