KEGG   Salvelinus fontinalis (brook trout): 129825000
Entry
129825000         CDS       T11136                                 
Name
(RefSeq) histone deacetylase 2
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
sfon  Salvelinus fontinalis (brook trout)
Pathway
sfon03082  ATP-dependent chromatin remodeling
sfon03083  Polycomb repressive complex
sfon04110  Cell cycle
sfon04330  Notch signaling pathway
sfon04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    129825000
   03083 Polycomb repressive complex
    129825000
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    129825000
   04350 TGF-beta signaling pathway
    129825000
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    129825000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sfon03036]
    129825000
Enzymes [BR:sfon01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     129825000
Chromosome and associated proteins [BR:sfon03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     129825000
   HDAC complexes
    Sin3A-HDAC complex
     129825000
    BRAF-HDAC complex
     129825000
    REST complex
     129825000
    SHIP complex
     129825000
    MiDAC complex
     129825000
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     129825000
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    129825000
  Chromatin remodeling factors
   NuRD complex
    129825000
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 129825000
NCBI-ProteinID: XP_055740603
LinkDB
Position
27:10135434..10143703
AA seq 467 aa
MAYTVAGGTKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ATAEEITKYHSDDYIQFLQSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSA
AGSVKLNRQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYVDIDIH
HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGVDDESYE
LIFRPVMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIRGHAKCVEYIKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDTEIPDELPYNDYFEYFGPDFKLHISPSNMTNQNTLEY
MDKIKQRLFENLRMLPHAPGVQMQTVPEDAITDDTVDEDAEDPDKRTSIRASDKRIACDE
EFSDSEDEGEGGRRNEANHKKGTKRTRVEEEEKVEVEKLKETSTELT
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggcttacaccgttgcaggtggaaccaagaagaaagtctgctactactatgacggtgac
attggcaattactattatggacaagggcatcccatgaaaccacaccgaattcgaatgacc
cacaacctactgttgaactatggactgtacagaaaaatggaaatatatagaccacacaaa
gccactgcagaggaaattaccaaataccacagtgacgattacatccagttccttcaatcc
atacgaccagacaacatgtcagagtacagcaagcaaatgcagaggtttaatgttggtgag
gattgtcctgtatttgatgggttgtttgagttctgccagttgtctaccggtggctctgct
gcgggatcggtgaaactcaacaggcagcagacggacattgcggtgaactgggccggtgga
ctccaccacgctaagaagtctgaggcctctggcttctgttacgtcaatgacatcgtgttg
gccattctggagctcctcaagtaccatcagagggtactgtacgtagatattgacatccac
catggggatggagtagaggaagccttctacaccacagaccgggtcatgactgtgtccttc
cacaaatatggagagtacttccccgggactggagacctcagggatattggtgctggaaaa
ggcaaatactacgcagtcaacttccccctgagggacggcgttgacgatgagtcgtatgag
ctgatcttcaggcctgtgatggccaaggtgatggagatgtaccagcccagtgcagtggtt
ctgcaatgtggagcagactccctctcaggagaccgactgggctgcttcaacctcaccatc
cgcggccatgctaagtgtgttgagtacattaagtcattcaaccttcccctgctaatgctg
ggtggaggaggctacaccatccgcaacgtggcccgctgctggacctacgaaacagccgtg
gctctggatactgagatccctgatgaactgccgtacaatgattactttgagtactttggg
cctgacttcaagttgcacatcagcccatctaacatgaccaaccagaacacattggagtac
atggataagatcaagcagcgtctgtttgagaacttgcgcatgctacctcacgccccggga
gtgcagatgcagacggtccctgaggacgccatcactgacgatacggtggatgaggatgca
gaggaccccgacaaacgcacgtccatccgtgcttcagacaagaggatagcctgcgacgag
gagttctccgactctgaggacgagggagagggaggaaggaggaacgaagccaatcacaag
aagggaacaaaacggactcgagttgaggaggaagagaaagttgaggtggagaaattgaag
gaaacaagcacagaactgacataa

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