Salvelinus fontinalis (brook trout): 129825527
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Entry
129825527 CDS
T11136
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04140
Autophagy - animal
sfon04142
Lysosome biogenesis
sfon04145
Phagocytosis
sfon04148
Efferocytosis
sfon05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
129825527
04142 Lysosome biogenesis
129825527
04140 Autophagy - animal
129825527
04148 Efferocytosis
129825527
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
129825527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfon04131
]
129825527
Membrane trafficking [BR:
sfon04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
129825527
Hops complex
129825527
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
zf-RING_11
Lact-deh-memb
zf-RING_16
zf-RING_2
zf-RING_UBOX
aq_1631
DUF5600
DUF1664
zf-ANAPC11
zf-rbx1
zf-C3HC4_2
DUF4446
STX17_N
zf-RING_5
Apolipoprotein
Motif
Other DBs
NCBI-GeneID:
129825527
NCBI-ProteinID:
XP_055741667
LinkDB
All DBs
Position
27:37876069..37899297
Genome browser
AA seq
985 aa
AA seq
DB search
MSSILDEYEDSQNSRHPVQHSSRLSAANIGITHSGFVNVRLEEEKPIFNKQRIDFSPPEK
INHFAVCNNQLCMSLGEDTLLRIDLAKPDQPNQIELGRKDDSRVHKLFLDPTGSHLVISL
STSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLGTETNTGPILVGTSQGIIFEAEISA
SEGSLFNTNPDQYFKQVHSLEEDGRPAPVCCIEVERGPESKVVIIATTRKRLFQFVGRVA
EGSEQQGFSAVFSQNQELLPSFQEFPFNMGYSEITFYTSKLRSCPKAFAWMMGNGVLYGQ
LDYIRPDSVLSDVQVWDYTPDIDFSFNKPISIVLTQFHFLLLLPDRVKAICTLNGQVVYE
DVFPDKFGTLKKMIKDPAGGLVWIYTEKAVFRYHIQREARDVWQMYMSMNKFDLAKEYCR
DRPECIDMVLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQDEALKEFLLKK
LNNLKQSEKTQITLLVTWLTELYLNHLGLLESDEGKSGVFQETRDEFRKFLSSSKHKECL
YNNRTTIYDLLASHGNVDDMVYFSVIMQDYERVISHHCQHDDYSAALEVLSKHCDEKLFY
KFSPILMQHIPKKVVDAWIQMGSRLEPKKLIPALVNYSQMGSTQQVNETIRYMEFCVYQL
TVTEEAIHNYLLALYAKYKPDSLLCYLEQAGTHASDIHYDLKYTLRLCAEHGYLQACVLV
YKIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNC
LSSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIDELKQEMEEATESAKRIRED
IQEMRNKYGVVESQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFLEVSPHLSTYKQTKLG
ELQKKLAAATQTSKSRHRPSPKEKEGGDTASLGKESAGVSREQIKSDIDDIIAFECVYCG
ELMIKSIDKPFIDPQKLEEEKSSWL
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctatcctggatgaatacgaagactcgcagaacagcaggcaccctgtgcaacac
agtagccgcctgtctgctgccaacatcggcataacacattcagggtttgtgaatgtgaga
ctcgaagaggagaagccgatattcaacaaacagaggattgatttctcacccccagagaag
atcaaccactttgctgtctgcaacaatcagctatgcatgagtttaggggaggacactctt
ctgaggattgaccttgccaagccagaccagcccaaccagatagaactggggaggaaggat
gacagcagagtacacaagctcttcctggaccccacagggtcccacctggtgatttctctc
agtaccagtgagtgtctgtatctgaacaggaacacccagaaggtgaggtctctgtcccgc
tggagaggacacctcatagagagtgtaggctggaacaagcttctggggacagagaccaac
actgggcccatcctagtgggaaccagccagggaatcatcttcgaggctgagatctctgct
tcagagggaagcctgtttaacaccaaccctgaccagtacttcaaacaggtccattccctg
gaggaggacgggaggcccgctccagtatgctgtatagaggtggaacgaggtccggagtct
aaagtcgtcatcatcgccaccaccaggaagcgtctgttccagttcgtaggtcgtgtggca
gaggggtccgagcagcaaggcttcagcgccgtcttctcacagaaccaggagctgctgccc
agcttccaggagtttccgtttaacatgggctacagtgagatcaccttctacacctccaag
ctcaggtcctgccccaaggccttcgcatggatgatgggtaacggagttctctacggtcag
ctggactacatcaggccggactcagtgctcagtgatgtgcaggtgtgggattacacccca
gacatagacttcagtttcaacaagcccatctccatcgtgttgactcagttccactttcta
ctcctcctccctgaccgcgtcaaggccatctgcaccctcaacggacaggtggtgtacgag
gatgtctttcctgataagttcggcacgctgaagaagatgatcaaagacccagcaggaggc
ctggtgtggatctatactgagaaggccgtcttcagataccacatccagagagaagccagg
gatgtgtggcagatgtacatgagtatgaacaagtttgacctggctaaggagtactgccgg
gaccggccagagtgcattgacatggtgctggctaaggaggcagaacactgcttccagaac
aaacgctacttggagagtgctaagtgttacgctctgacccagaactacttcgaagagatt
gctttgaagtttatcgaggcaaaacaggacgaggctctgaaagagttcctgctgaagaaa
ctcaataatttaaaacagagtgagaagacccagatcaccctactcgtcacttggctgact
gagctctacctgaaccacctggggcttctagaatcagacgaggggaaaagcggggtgttc
caggagacgcgtgatgagttccggaagttcctcagtagctccaaacacaaggagtgtctc
tataacaaccgaacgaccatctatgacctgctggctagccacggcaacgtagacgacatg
gtctacttctctgtcatcatgcaggactatgagagggtgatctcccaccactgtcagcat
gatgactatagcgccgccctggaggtgctctctaagcactgcgacgagaagctcttctat
aagttctcccccatcctcatgcaacacatacctaagaaggtggtggatgcgtggatccag
atgggtagcaggctggagcctaagaagctgatcccggccctggtcaactacagtcagatg
ggttcgacacaacaggtcaacgagaccatccgttacatggagttctgtgtctaccagctc
actgtgaccgaagaggccatacacaactacctgctggccctctacgccaagtacaaacct
gatagtctcttgtgctacctggaacaggctggtacccacgcgtcagacatccactatgac
ttaaagtacaccctgaggctatgtgctgaacacggttacctccaggcctgtgttctggtc
tataagatcatggagctgtatgaggaagctgtcgatctggccctacaagtggatgtggac
ctggccaagtcatgtgctgacctgcctgaggatgatgaggagttgaggaagaagttgtgg
ctgaagatagcccgtcacgtggtgcaagaggagaaggatgtgaagaaggccatgaactgt
ctgtccagctgtaacctgctcaagatagaagacatactgcccttcttcccggattttgtc
accatagaccacttcaaggaggctatctgcagctctttagaggaatacaaccagcatata
gacgagctgaagcaggagatggaggaggcgacggagagcgccaagcggatcagagaggac
atccaggagatgaggaacaagtacggggtggtggagagtcaggagaaatgtgctgcctgc
gacttccccctcctcaacagacccttctatctgttcctctgtggtcacatgttccactac
gactgcctcttcctggaggtgagccctcacctgtccacctacaagcagactaaactaggt
gagctgcagaagaagttggctgcagccactcagacctccaagtctcgccaccgcccctcc
cccaaggagaaggaggggggcgacactgccagcctgggcaaagaaagtgccggagtcagc
cgtgagcagatcaagtcagacattgatgacatcatcgcgtttgaatgtgtgtactgcggc
gagctgatgatcaagtcgatcgacaagccttttattgatccacagaagttggaggaggag
aagtccagctggctctga
DBGET
integrated database retrieval system
