Salvelinus fontinalis (brook trout): 129825842
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Entry
129825842 CDS
T11136
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129825842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfon03041
]
129825842
03009 Ribosome biogenesis [BR:
sfon03009
]
129825842
Enzymes [BR:
sfon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129825842
Spliceosome [BR:
sfon03041
]
Complex A
U1 snRNP components
U1 related factors
129825842
Complex B
129825842
Ribosome biogenesis [BR:
sfon03009
]
Eukaryotic type
Pre-60S particles
Helicases
129825842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129825842
NCBI-ProteinID:
XP_055741953
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Position
2:complement(74911596..74917076)
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AA seq
617 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGGGKFGNPGDRLRKKHWNLDELSKFDKNF
YQEHPDVTRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPT
PIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRE
LAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTN
MRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYV
QINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEIT
RRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDY
PNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRG
GHSRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRENDRGFDSGPKKVFGTNSQSGGYGAS
GFDKSGNGFGGGYGTNGQSNYGASQAGAFPTQNFQAPQFSANQGGAQSGMSHQQFPFTQQ
QAPQPMVPYPMPPQFPQ
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggtagagatagaggttatggcagcggaccacct
cgttttggaggcggtggaagaggaggaggaggtggtggggggaagtttggtaatcccggt
gatagactgcgcaagaagcactggaaccttgacgagctctctaaatttgacaagaacttt
taccaagagcaccccgatgttactcggagatctccgcaagaggttgcacagtacagaagt
actaaagcggttactgtgaaggggagggactgccccaatccaattatgaagttccatgaa
gccagttttccaacctatgtgatggatgtcattaacaaagcaggctggtcagaaccaaca
ccgatccaagcacagggttggccactggcattgagtggcaaggacatggttggtattgca
cagacaggctctgggaaaactctctcgtacttgttgccagcaatcgtgcacattaatcac
cagcctttcctggaacgtggagatggccctatttgcttagtgcttgctccgacccgtgag
ctggctcagcaggtccagcaggtggcagcagagtatggcagagcttctcgcctgaagtct
gtctgtgtttatgggggcgcgcccaaagggccacagctccgtgacctggatagaggtgtg
gagatttgcattgccacacctggcaggcttattgacttcctggaggcaggaaagaccaac
atgcgcagatgcacttacctggtcctggatgaggctgaccgaatgctcgacatgggtttc
gaaccacaaatccgaaaaattgtggaccaaatcagacctgaccgacagacactgatgtgg
agtgccacctggcccaaagaggtgcgccagctggcagaggacttcctgaaggactacgtc
cagatcaatgtgggtgctctgcagctgagtgccaaccacaacatcttgcagatcgtggat
gtttgcaatgatggcgagaaagaagacaaactcctccgcctactagaggagatcatgagt
gagaaggagaacaaaaccatcatctttacagagaccaagaggagatgtgacgagatcact
aggaggatgaggcgggatggttggccagcaatgggcatccacggagacaagagccagcag
gagagggactgggtgctcaatgagttcaagttcggaaaggcgccaattctcattgccaca
gacgtcgcctccaggggtctagatgttgaagacgtgaaatttgtcatcaactttgactac
cccaacaactctgaggactatatccaccgcatcggcagaactgcccggagccaaaagact
ggcacagcctacaccttcttcacccccaacaacatgaggcaggccagcgacctcgttgct
gtgctccgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagagga
ggtcattcaaggggaggcagaggtggtagtggatttagggatgaccgccgggacaggtac
tcctccgggggcaggcgtgacttcagtagctttagggacagggaaaatgatagaggtttt
gacagtggaccaaagaaggtctttggcacaaattcacagagcgggggctatggggcaagt
ggctttgacaaaagcggcaatggttttggtggcggctacggcaccaacggccagtcaaac
tatggtgccagccaggccggggcgttcccaacgcagaacttccaggccccacagtttagt
gccaaccagggcggtgcacagagtggcatgagccatcaacagttccccttcacacagcaa
caagcaccacagcccatggtgccttacccaatgccccctcaattcccacagtaa
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