Salvelinus fontinalis (brook trout): 129826251
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Entry
129826251 CDS
T11136
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129826251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfon03041
]
129826251
Enzymes [BR:
sfon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129826251
Spliceosome [BR:
sfon03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
129826251
Complex C
U5 SnRNP specific factors
129826251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
DUF603
Motif
Other DBs
NCBI-GeneID:
129826251
NCBI-ProteinID:
XP_055742753
LinkDB
All DBs
Position
28:15395129..15423322
Genome browser
AA seq
2137 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLVGTKMGDKSQRTK
PSMQGEKRAKRRKRDEDGHDMNKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDDGSDDESEGEEADLGCTL
TANLGVTGDVMTAKKKELHPRDIDAFWLQRQLSRFYDDAIISQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKEKIIGKMEADPDLSKVL
YQLQETEKEDIIREERSRRERVRKSRVDNDLESMDIDHGESMAPKQLLDLEDLAFTQGSH
FMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVAIEKLPKYAQAGFEGFKTL
NRIQSKLFKTAMETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINLDDFKIIYV
APMRSLVQEMVGNFSKRLASYGITVSELTGDHQLCKEEINATQVIVCTPEKWDIITRKGG
ERTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDV
ATCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV
LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG
FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDML
NAEIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMDLIHTAA
NVLDKNSLVKYDKRTGAFQVTDLGRIASHFYITHNSIQTYNQLLKPTLSEIELFRVFSLS
SEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADM
VYVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIK
KIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVE
LTITPDFQWDDKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEP
LPPQYFIRVASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNAAFETLY
HNKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITP
MEALAEQVFVDWHQKFQDALNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQ
RKNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA
HWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVV
FVPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLEKVTDGTLKETLANGVGYLH
EGLSTTERRIVEQLFNSGAVQVVVASRSLCWGTNISAHLVVIMDTQYYNGKIHAYVDYPI
YDVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIV
TKTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKC
ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIR
HHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPYFTLEHIKRCTDKGVES
IFDIMEMEDEDRSGLLQLSDTQIADVARFCNRYPNIELSYEVAEKENIKSGGPVLVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVLGI
HNYTLYFMSDAYMGCDQEYKFSVDVKEAESDGDSDSD
NT seq
6414 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgttactgcgcgtagcttgcagtatgaatacaaagcgaactccaacttggtc
ttacaagcggaccgttcgctcattgaccgcacaaggcgcgatgagcccacgggagaggtg
ctgtccctggtgggaaagttggtgggaaccaagatgggtgacaagtcccagaggaccaaa
ccttcaatgcaaggagagaaacgggcaaagaggaggaagagagatgaggacgggcacgac
atgaacaagatgaagggcttcacactcctgtcagaaggcattgatgagatggtgggcatt
gtgtacaagcctaagaccaaggagactagggagacctacgaggtccttctcagcttcatc
caagctgccctgggagatcagccaagagacatcctttgtggagcagctgacgaggtgctg
gctgtgctgaagaatgacaagatgagggacaaggagagacggcgtgaagtggagcagcta
ctagggcccgcagatgacacacgctaccacgtgcttgtcaacctgggcaagaagatcagt
gactacgggggtgacaaggagctgcagaacatggatgacaacattgacgaaacatatggg
gtgaatgtccagtttgaatctgatgaggaggagggtgatgaggaccagtttggggaggtg
cgagatgatggctcagatgacgagagtgaaggagaggaagcagacttgggctgcaccctg
acagccaaccttggtgtgacaggtgatgtgatgacagccaagaagaaggagctgcaccct
cgtgacattgatgccttctggctccagcgtcagctcagccgtttctatgacgatgccatc
atctctcagaagaaagcagatgaggttctggagatcctcaagacggccagtgatgacaga
gaatgtgagaaccagctggtcttactgttgggattcaacactttcgacttcatcaaaatc
cttcggcagcatcggcggatgatccagtactgtaccatgttggcaagtgctcagagcgaa
gcagagaaggagaagattataggaaagatggaggcagatccagacttgtccaaagttctt
taccagctgcaggagactgagaaggaggatattattagggaggagcgatctcgcagggag
agagtgaggaagtctcgtgtggacaatgacttggagtctatggacatcgaccacggagag
tccatggcccctaaacaactgctggacctggaggacctggccttcacccagggaagccac
ttcatggccaacaagaggtgccagctaccagacgggtccttccgcaagcagcgcaaaggc
tacgaggaggtgcacgttcctgccctcaagcccaagcccttcgctgacgatgaggtgctg
gtggccattgagaagcttcccaagtatgcccaggcaggtttcgaaggattcaaaaccctg
aaccgcatccagagcaagctgttcaagactgctatggagaccgacgagaacctgcttgtg
tgcgctcctacgggggcaggcaagaccaacgtggccctgatggcaatgctgagggagatc
ggcaagcacatcaacctggacggaaccatcaacttggacgacttcaagatcatctacgtt
gctccgatgcgctcgctggtacaggagatggtggggaactttagtaagcgtctggctagt
tacggcatcacagtgtctgagctgactggagaccaccagctgtgtaaagaggagatcaat
gccacccaggtcatcgtctgcaccccagagaaatgggacataatcacgcgcaaaggaggc
gagcgcacctacacccagctagtgcgcctcatcatcattgatgagatccatctgctgcat
gacgaccgcgggccagtcctagagtctctggtggccaggaccatccgcaacgtggagctg
acccaggaggacgtgcgtctgctgggtctcagtgccaccctgccaaactacgaggacgtg
gccacctgcctgcgtgtggaccccgctaagggactcttctactttgacaacagtttccgc
ccagtgcctctggagcagacgtatgtgggcatcactgagaagaaggccatcaagcgattc
cagatcatgaatgagattgtctatgagaagatcatggagcatgctgggaagaaccaggtg
ctggtgtttgtccactccaggaaggagactgggaagacggcccgggccatcagggacatg
tgtctggagaaggacactctggggctgttcctgagggagggctcagcctccaccgaggtc
ctcaggactgaggcagagcagtgcaagaaccttgagcttaaggacttgctgccttacggt
tttgccatccatcatgctggtatgaccagagtggaccgtaccttggtagaagatctcttt
gctgatcgccacatccaggtgctggtgtccacagccacattggcctggggtgtgaatctg
cctgctcatactgtcatcatcaaaggcacccaggtgtacagcccagagaaaggccgatgg
acagagctgggagccctggacattctacagatgcttggtcgagctgggcgtcctcagtac
gacaccaagggagagggcatcctgatcacatcccacggagagctgcagtactacctgtct
ctgctcaaccagcagctgcccatcgagagccagatggtgtccaagctgccagatatgctc
aacgctgagatagtactgggcaatgtgcagaatgctaaggatgcagtgaactggctgggc
tacacctatctgtatgtgcgtatgctccgtaaccccaccctgtacggggtctcccatgac
gaccgcagctctgaccccttgctagagcgccgcaggatggacctgatccacactgcagcc
aacgtgctggacaagaacagcctggtcaagtatgacaagaggactggcgccttccaggtt
actgacctgggtcgcatcgccagtcacttctacataacccacaactccatccagacctac
aaccagctgctgaagcccacccttagtgagatcgagctgttccgcgtcttctccctctcc
tcagagttcaggaacatcactgtcagagaggaagagaagctggagctgcagaagcttctg
gagagagttcccattccagtgaaggagagcattgaggaacccagtgctaagatcaacgtg
ctgctccaggcttacatctctcagctcaaactggagggctttgctctgatggctgacatg
gtctatgtgacacagagtgctggaagactgatgcgagcaatctttgagatcgtcctgagc
aggggatgggcccagctcacagacaagaccatgaacctctgcaagatgattgacaagagg
atgtggcagtccatgtctcctctgcgtcagttcaggaagctcccagaggaagtcatcaag
aagattgagaagaagaacttccccttcgagcgcctctatgacctcaaccacaatgagatt
ggtgagttgatccgcatgcccaagatggggaagaccatccacaagtacgtgcaccagttc
cccaaactggacctggccgtccacctgcagcccatcacccgttccacactgaaggtggaa
ctcaccatcacaccagacttccagtgggatgacaaggtgcatggctcatcggaggccttc
tggatactggtggaggatgtggacagtgaggtcatcctacaccacgagtacttcctgctc
aaggccaagtacgcccaggacgagcacctggtcaccttctttgtgcccgtgtttgagccc
ctgcccccgcagtacttcatccgtgtggcctcggatcgttggctatcctgtgagacgcag
ctgccggtgtctttccgccacctgatcctgccagagaagtacccccctcccactgagctg
ttggacctgcagcccctgcctgtgacagccctccgtaatgccgccttcgagaccctctac
cacaacaagttccccttcttcaaccccatccagacgcaggtgttcaacgctgtgtacaac
agtgacgacaacgtgtttgtgggagccccgaccggcagtgggaagaccatctgtgctgag
tttgccatcctgaggatgctgctgcacaacgcagagggccgatgtgtctacatcacaccc
atggaggccctggctgaacaggtgtttgttgactggcaccagaagttccaggatgctctg
aataagaaggtggtgttgctgacgggagagaccagcactgacctgaagctgctgggcaag
ggtgacatcatcgtcagcaccccggacaaatgggacatcctgtcacgccgctggaagcag
aggaagaacgtccagaacgtcagcctcttcatcgtggacgagactcacctcattggagga
gagaatggacctgtgttggaggtaatctgctccaggatgaggtacatctcatctcagatt
gagcgtcccatccgcatcgtggccctcagctcctccctgtccaacgccaaagacgtggcc
cactggctgggatgcagtaccaccgcaaccttcaacttccaccctaacgtcaggcctgtc
cctctggagctgcacatccagggcttcaatgtgagtcacacccagactcgcctgctgtcc
atggccaagccagtgtaccacgccatcatgaagcactccccctccaaaccggccgtggtg
ttcgtcccatcccgccgacagacccgcctcaccgccattgacatcctcaccttctgtgct
gctgacgtggtccctcagaggttcctgcactgcacggagaaggacctggctccctttctg
gagaaggtgacggacggcaccctgaaggagacgttggccaatggggtgggctacctgcac
gagggtctgtccaccacagagcgcaggatcgtggagcagctcttcaactcaggtgcagtc
caggttgtggtggcttcacgctccctctgctggggaaccaacatctctgctcacttggtc
gttatcatggacacccagtattacaacggcaaaatccatgcctacgtggactaccctatt
tacgatgtgctccagatggtgggcaaggccaaccggcccctgcaggacgatgagggacgc
tgtgtcatcatgtgtcagggttccaaaaaggatttcttcaagaagttcctgtatgagccc
ctgccggtggaatctcacctggaccactgtatgcatgaccacttcaacgctgagatcgtc
accaagacggtggagaacaaacaggacgcagtggactacctgacctggaccttcctgtac
cgccgcatgacccagaaccccaactactacaacctgcagggcatgtctcaccgtcacctg
tcagaccacctgtcagagctggtggagaacaccctgcatgatctagagcagtccaagtgc
atcagcatcgaggatgagatggacgtggcacctcttaacttgggcatgatcgctgcctac
tactatatcaactacaccaccatcgagttgttcagtatgtccctgaacgccaagaccaag
attcgtggattgattgagatcatctccaatgctgcggagtacaagaacatccccatcaga
caccatgaggacaacctgctcagacagctggcccagaaggtgccacacaaactgaacaac
cccaagttcaacgacccacacgtgaagaccaatctgctgctgcaggctcacttgtccagg
atgcagttgagtgctgagctgcagtcagacacagaggagatcctcagcaaggctgtgcgt
ctgatccaggcctgtgtagatgtgctgtccagtaacggctggctaagccctgcgctggct
gctatggagctggcccagatggtcacccaggccatgtggtccaaggactcctacctcaaa
cagctgccttacttcaccttggagcacatcaaacgctgcacagacaagggtgtggagagt
atctttgacatcatggagatggaggatgaggatcgtagtgggttgctgcagctctcagac
acacagatagctgacgtggctcgcttctgtaaccgctaccccaacattgaactgtcctac
gaggtggcagagaaggagaatatcaagagtggaggtccagttttggttctggtccagttg
gagagagaagaggaggtgactgggcctgttattgccccactcttcccccagaaacgtgag
gagggctggtgggtggtgattggagaccccaaatccaacagcctgatctccatcaagagg
ctgacactgcagcagaaggccaaggtgaagctggacttcgttgcaccagtgctgggcatt
cacaactacacactgtacttcatgagtgatgcctacatgggctgtgatcaggagtataag
ttcagtgtggacgtgaaggaggcagaaagtgatggagacagtgactcagactaa
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integrated database retrieval system
