Salvelinus fontinalis (brook trout): 129826593
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Entry
129826593 CDS
T11136
Symbol
cnot6l
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129826593 (cnot6l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129826593 (cnot6l)
Enzymes [BR:
sfon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129826593 (cnot6l)
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129826593 (cnot6l)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129826593 (cnot6l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
type_II_gspD_N0
LRR_R13L1-DRL21
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
129826593
NCBI-ProteinID:
XP_055743473
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All DBs
Position
28:32068931..32104889
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AA seq
550 aa
AA seq
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MPKEKYDSPDPRRLYTIMSAEELANGKKSHWAELEISGRVRSLSSSLWTLTHLTALHIND
NNLSRIPPDIAKLPHLAYLNLSSNKLRSLPAELGNMASLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILNLYQESDGTRKLLNYMLDNLAVHPEQLPQRPWITLKERDPMTP
TAMFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITHCDADIISLQEVETEQ
YYALFLETLKDHGYDGYFCPKSRAKLVSEQERKHVDGCAVFFKTEKFTLVQKHTVEFNQV
AMANSEGSEVMLNRVMTKDNIGVAVLLEVNKDMFSGGMKPLQETQFLLVANAHMHWDPEF
CDVKLIQTMMFLSELKSITERALSSVATGSPTSDPASIPIVLCADLNSLPDSGVVEYLSN
GGVAENHKDFRELRYNEALSNFSCQGKNGPSDGSITHSFQLKSAYQGSLMSYTNYTYDFK
GVIDYIFFSKTHMSVAGLLGPLESQWLTDNNITGCPHPHIPSDHFSLLAQLELHPPVVTS
LNGLHLPVHR
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgattccccggatcctcgccgattatacaccatcatgtcagct
gaggagttagccaacgggaagaagtcgcactgggccgagctggagatatcaggtcgggtc
agaagtctgagcagttctctgtggaccctcacccacctgacggctctacacatcaacgac
aacaatctgagtcgcatcccgcccgacatcgccaagctgccacacctggcctacctgaac
ctgtcgtccaacaagctccgcagcttgcccgccgaactcggaaacatggcgtctctcagg
gagttgcttttaaacaacaatcttttgcgagttctaccttacgaactcgggcggctgttc
cagttacaaaccctggggctaaaaggtaaccctttgtcccaagacatcctcaacctgtac
caggaatcagacggaaccagaaagctcttgaactacatgcttgacaatctagcagtgcac
ccagaacagcttccccagagaccttggatcaccttgaaggagcgagacccaatgacccct
acagccatgttcacagtgatgtgttacaatgtgctgtgtgacaagtacgccacccgtcag
ctgtacggctactgcccctcctgggccctcaactgggagtacaggaagaagggcatcatg
gaggagatcacacactgtgacgctgacatcatcagtctacaggaggtggagacggagcag
tactacgccctcttcctggagactctaaaagaccatgggtacgacgggtacttctgccca
aagtctcgtgccaaactggtctcggaacaggagaggaagcacgtggacggatgtgctgtg
ttcttcaagactgagaaatttactctggtgcagaaacacacggtggaattcaaccaggtt
gccatggcaaactctgaaggttcagaggtcatgttgaacagggtcatgaccaaggacaac
atcggggtcgctgtcctgctggaggtcaacaaggacatgttctctggtggcatgaagcct
ctgcaggagacacagttccttctggtggctaacgcccacatgcactgggacccggagttc
tgtgacgtcaagctcatccagaccatgatgttcctgtctgagctgaagagcatcacagag
agggcgctgagctccgtggcaacaggctccccgacctccgaccccgcctccatccctatt
gttctctgtgctgacctcaactccctgccagactctggtgtagtggagtacctgagtaac
ggcggcgtagcagagaaccataaggacttcagagagctacgctacaacgaagcgctcagc
aacttcagctgccaggggaagaacggcccttctgacggcagcatcacacacagcttccag
ctgaagagcgcctaccagggcagcctcatgtcttacaccaactatacgtatgacttcaag
ggcgtgatcgactacatcttcttctccaagactcacatgtctgtagccggcttgctcggt
cccctggagtctcagtggttaacggacaacaacatcaccggctgtccccacccccacatc
ccctctgaccacttctctctgctcgctcagctggagctccacccgcccgtcgtcacctcc
ctcaacggcctgcacctgcccgtccacaggtag
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