Salvelinus fontinalis (brook trout): 129827315
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Entry
129827315 CDS
T11136
Name
(RefSeq) tumor necrosis factor ligand superfamily member 13B-like isoform X1
KO
K05476
tumor necrosis factor ligand superfamily member 13B
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04060
Cytokine-cytokine receptor interaction
sfon04672
Intestinal immune network for IgA production
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
129827315
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
129827315
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
sfon04052
]
129827315
04090 CD molecules [BR:
sfon04090
]
129827315
Cytokines and neuropeptides [BR:
sfon04052
]
Cytokines
Tumor necrosis fators
129827315
CD molecules [BR:
sfon04090
]
Proteins
129827315
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNF
DUF7237
Myf5
Motif
Other DBs
NCBI-GeneID:
129827315
NCBI-ProteinID:
XP_055744022
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Position
29:complement(1027063..1046246)
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AA seq
245 aa
AA seq
DB search
MLYHALLLVSTLTVFFSFFLVYKVTVLEDDISKLRGDISNLKPHSNESTDGMRTGMSRTW
ERSKQATSLNSQRQTEKDSQTLCSSTASSLRMKPESAGCSGGTVVVQQSFLQLSANTKEQ
PFVRGNVTVIPWTVALHQGEAISSTGDRIIIQQEGLFIVFGQVLFQSPGTIMGHIVRSRR
TGQRSTELLRCLQEMPQTNCANTCYTGGMVKLEREDELELVIPDRPQAQVSMDADSTFFG
IIRLN
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atgctgtaccatgctttactattagtatcaacattaactgtgttttttagcttcttcctt
gtatacaaagtaacagttctcgaagatgacatcagcaaactcagaggagatatttcaaac
ctaaagccacattctaacgaatccacagatggaatgagaacgggtatgtccagaacatgg
gagagatcaaagcaagcaacttccctaaattcacagagacagacagagaaagactctcag
actctgtgttcgtcaacagcgtcctctctgagaatgaaaccggagtcggcgggctgcagt
ggaggtacagtagtcgtacagcagtcgtttctgcagctgtcagccaacacaaaggaacag
ccatttgtcagaggaaatgtgacggtgattccttggacagttgccttgcatcaaggggag
gccatctcttccacgggagacagaattatcatccaacaagaaggcctcttcatagtgttt
ggtcaggtgttgttccagagtccaggcaccatcatggggcacatagtgcgtagtcgaaga
accggtcagagatccacagagctgctccgctgtctacaggagatgccccagaccaactgt
gccaatacctgctacactggaggcatggtgaagctggagagagaagacgagctggagctg
gtgatcccagatcgaccccaagcccaggtctccatggacgcagactcaaccttctttggc
atcatacggctgaactga
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