Salvelinus fontinalis (brook trout): 129827462
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Entry
129827462 CDS
T11136
Name
(RefSeq) protocadherin-11 X-linked-like isoform X1
KO
K16498
protocadherin delta 1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
129827462
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sfon01009
]
129827462
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfon04515
]
129827462
Protein phosphatases and associated proteins [BR:
sfon01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129827462
Cell adhesion molecules [BR:
sfon04515
]
Cadherins
Protocadherins
129827462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
DUF6249
DUF6377
Motif
Other DBs
NCBI-GeneID:
129827462
NCBI-ProteinID:
XP_055744321
LinkDB
All DBs
Position
29:14756073..15111389
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AA seq
1241 aa
AA seq
DB search
MDIAGQAHVLVVLLTCLVMLSLAQEKDYTVREEQPENVRIGNLRKDLDLNLDPDFKLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTAHRIDREKLCSGVFNEKRCFYEIEVAVLPDEIF
RLVKIRFLIEDINDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDRWPQLIVQQSLDREQKDTFVMKIKVEDGGTPPKSSTAILQVTIS
DVNDNRPVFKDSEVEVNIPENAPIGTSVTQLHATDADLGSNAQIHFSFSNQISSSTKRHF
SIDSTTGLITVKQPLDREATPVHKLIVLASDGSSTPSRAAVIVNVTDINDNVPSIDTRYI
MNLVNGTVLLSENAPLNTKIALITVTDKDSDLNGKVTCYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDSGKPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISAMDADSGHNAEIIYSLGPDAPDGFNIDRRSGILSVGKRLDREKQEKYSFTV
MARDNGSTSLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDSDAG
DNSVITLSILNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAIDGGQPPSTSYAKVT
INVVDVNDNRPVFLIPSSNYSYDLVQSTTSPGSVVTRVFAIDNDTGMNAELQYSIIGESP
RGLFAIDKTTGNITLQEKIVSADQGLHRLVVKVKDLGQPESLHAIALIHLFINETVSNAT
FIQEQLRKSLETPLDRNVGDSEVTPQANGYVIVVIAIIAGTMTVILVIFVTALVRCRQTP
RHKVVQKGKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVSIEESKPDDPSQEHING
TLDLPVELDEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPMAPNKHHV
IQELPLDNTFVVGCDSHSKCSSTSSDPYSVSECSCQGGFKTPGQIHTRQNQGQTPEKSLN
SDASTCPHKTQRRVTFHLPDGSQESCSDSGLGDQEPSSIASTTQPLPLGFPQEEYYQQTS
PNSRTEGDGNSDPESTMVEVNLTKALAEASETCTQECLILGHSDSCWMPPVLVTQFQSPS
NTGTLPTLPSFGFQHQQSYPWARGAKADGRQCHTLGRPAPKDDLAKGMNRPQFYNTLERQ
CSSKSKVSDPVKVIPLASFSSPLSSQQTPATEGSFLHEHQL
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atggacatagcaggtcaggctcatgtgttggtggtgttgctcacctgcctggtcatgctg
tccttggcccaagagaaggactacacggtgagggaggagcagcccgagaatgtccgcatc
gggaacctgcggaaggacttggacctgaaccttgaccctgacttcaagctgtcctctcca
ctgcagtttaagcctgtctacaaaacgggcgatgtgcctttggtgagggtagaggccaac
accggggagatcttcaccacggctcatcgcatcgaccgcgagaagctctgctcgggagta
ttcaacgagaagcgctgcttctacgagatcgaggttgccgttctgcccgacgagatcttc
cgtctggtcaagatccggttcctgattgaggacatcaatgacaacgctccactcttccag
tccaccgtaataaacatctccatcccagagaacactgccatcaacacccggtaccccgtg
ccctctgcatttgacccagatgtggggatcaatgggatccaacactatgaacttgtcaag
agtgtgagtgagtttggcctggacatcatcgagaccccggagggagacagatggcctcag
ctgatcgtccagcagagcctggaccgcgagcagaaggacaccttcgtcatgaagatcaag
gtggaggacggaggaacgccacccaagtccagcacggccatcctccaggtcaccatctcc
gacgtcaacgacaatcggccggtcttcaaggacagtgaggtggaggtgaacatccccgag
aacgcacccataggaacctccgtcacccagctccacgccacagacgcagacctcggctcc
aacgcccagatccacttctccttctctaatcagatctcctcatccaccaagaggcatttt
tccatcgacagcaccaccgggctgatcactgtcaagcagcccttagaccgggaggccacc
ccagtccacaaactcattgtcctagccagcgatggcagctccaccccctccagagctgct
gttatcgtcaacgtaacggacattaatgacaacgttccgtccatagacactcggtacata
atgaaccttgtaaatggaacggttctactgtcggagaacgctcctctcaacacaaaaata
gccctaattacagtgacggacaaggactctgatctgaacggaaaagtgacttgttatact
gaccacgatgttcctttcaggttaaagccagtctttaatgatcagttcctgctggagact
gcggcccccctagattacgaaacaaccagggaatatgctattaagatagtggcgtcggat
tctgggaagcctcctttgaacacttcagcgatggttttaattaaaattaaggatgagaat
gacaacgctcccatcttccctcagcctgagattcagctgtccataccagaaaacaatgat
ccatccacgcagctcataaagatcagtgccatggatgcagacagcggtcataatgcagag
attatttattctcttggccctgacgcccctgatgggtttaacatagatcgacggtcagga
atcctttccgttggcaaacgcctggacagagagaagcaggagaagtattcattcactgtc
atggcgagagacaatgggtctacttccctgcagagcaatgtcacagtgaggttaatagtg
caggacctcaacgacaacagcccagctttcacccatcctgagtataacttctacgtgcct
gagaacctgcctctgtacgggaccgtgggtctgatcaccgtcacagattctgacgcaggt
gacaactctgtcataacactgtccatcctgaacgggaaagacaatttcattattgatccc
cagaccggtgtgatcaaacccaacatcacgtttgatagagagcagcagagctcatacact
tttatggtgaaggctatagacggagggcaaccacccagcacttcatacgccaaggtcacc
ataaacgttgtggatgtcaatgacaatcgacccgtttttcttattccctcgtccaactac
tcatacgatctggtccagtctaccaccagccctgggtctgtggtcaccagggtgttcgct
atagacaatgacactggcatgaatgctgagctgcagtacagcataattggggaatcacca
agagggctgtttgccatagacaaaacaactggtaatataactctgcaggagaagatagtc
tcagccgatcagggtttacacaggctagtggtgaaagtcaaagacctgggccagccagag
tccttacacgcaatcgccctcattcacctgttcattaacgagactgtatccaacgccacg
ttcattcaagagcagctacgtaagagcttggagactccgttggaccgtaacgtgggagac
agtgaggtcacaccccaagccaacggatacgtgattgttgtcatcgctattatagctggg
actatgaccgtcatcttagtcatcttcgtgacagccttggtgcgctgtcgtcagacgccc
aggcacaaagtggtgcagaagggcaagcagagcggcgagtgggtgtcgcccaaccaggag
aaccgtcaaatcaagaagaaaaagaagaaaaagaagagatcccctaagagcctcctcttg
aactttgtcagcatagaagaatccaagcctgatgatcccagccaggagcacattaatgga
accctggacctgcctgtggagttagatgagcagaccatggggaaatacaactgggccact
acgccgaccaccttcaaacctgacagtccagacttagccaagcattacaagtctgcctcc
ccccagccaaccttccaaatcaaaccagagaccccgatggcgcccaataaacaccacgtg
attcaggagctcccgctagacaacacgtttgtggtgggctgtgactcgcactccaagtgc
tcctccaccagctcagacccgtactcggtctcagagtgcagctgtcaggggggattcaag
actcctgggcaaatccacaccagacagaatcagggccagacaccggaaaagtccttgaac
tcagacgcatccacctgtccccataagactcagcgccgcgtgacgttccaccttccggat
ggttctcaggagagctgtagcgacagtggtctaggggaccaggagcccagcagcattgcc
agcaccactcagcctctccccctcggcttcccccaggaagagtactaccaacagacctcg
cccaacagccgcaccgagggagacggaaactctgaccctgagtccaccatggtggaggtg
aacctgaccaaggctctggcggaagcttcagagacgtgcacccaggaatgtctgatcctg
ggccactccgacagctgctggatgcctcccgtcctggtgacccagttccagtctccgtcc
aacacgggtaccctgcctaccctgccctcctttggcttccagcaccagcagagttaccca
tgggccaggggagccaaggcggacgggcgtcagtgccataccctgggaaggcctgcgccc
aaagacgatctggctaaagggatgaaccggccgcagttctacaacactctggaaagacaa
tgcagtagcaagagtaaggtgtctgaccccgtcaaggtcatccctctggccagcttttcg
tcgcctttgtcaagccagcagaccccagccaccgaaggatcgttcttacatgagcatcag
ctgtaa
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