KEGG   Salvelinus fontinalis (brook trout): 129827471
Entry
129827471         CDS       T11136                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
sfon  Salvelinus fontinalis (brook trout)
Pathway
sfon03020  RNA polymerase
sfon03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    129827471
  09124 Replication and repair
   03420 Nucleotide excision repair
    129827471
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sfon03021]
    129827471
   03019 Messenger RNA biogenesis [BR:sfon03019]
    129827471
   03400 DNA repair and recombination proteins [BR:sfon03400]
    129827471
Transcription machinery [BR:sfon03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     129827471
Messenger RNA biogenesis [BR:sfon03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     129827471
DNA repair and recombination proteins [BR:sfon03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      129827471
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N
Other DBs
NCBI-GeneID: 129827471
NCBI-ProteinID: XP_055744341
LinkDB
Position
29:complement(15558262..15561541)
AA seq 172 aa
MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ
PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD
PNSNPPCYKTTDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS
NT seq 519 nt   +upstreamnt  +downstreamnt
atgttttatcatatttccctggagcatgagatcctgctccaccctcggtactttggtccc
aatctcctgaacactgtgaaacagaagctcttcacagaggtggagggaacatgcacagga
aaatatgggttcgtcattgcagtgaccaccattgacaacattggtgcaggtgtcatccaa
ccaggcaggggattcgtgctttaccccgtcaagtacaaggctattgtcttccgtccattc
aaaggcgaggtggtagatgccgtggttacccaggtcaacaaagttggccttttcacagag
atcggccccatgtcctgtttcatctctcgtcattccattccctcagagatggagtttgac
cccaactcaaatcctccctgttataagaccactgatgaggacattgtaatccaacaggat
gatgagattcggttgaaaatcgtgggaacaagagtggataaaaacgacatttttgccatt
ggatccctcatggacgattacctcggtcttgtcagctga

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