Salvelinus fontinalis (brook trout): 129827912
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Entry
129827912 CDS
T11136
Name
(RefSeq) nuclear cap-binding protein subunit 1-like isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03013
Nucleocytoplasmic transport
sfon03015
mRNA surveillance pathway
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129827912
09122 Translation
03013 Nucleocytoplasmic transport
129827912
03015 mRNA surveillance pathway
129827912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129827912
03041 Spliceosome [BR:
sfon03041
]
129827912
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
129827912
Spliceosome [BR:
sfon03041
]
Common components
Common spliceosomal components
Cap binding complex
129827912
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
HmpF
AAA_11
Vfa1
AAA_13
WIT1_2_N
FapA
GBP_C
EMC3_TMCO1
DUF1281_C
RRF
tRNA_bind_2
C24B10_03
Motif
Other DBs
NCBI-GeneID:
129827912
NCBI-ProteinID:
XP_055745172
LinkDB
All DBs
Position
29:complement(35278685..35285819)
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AA seq
796 aa
AA seq
DB search
MSRRRHSDGDDGGQSHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKANL
YTEALYLVRFLCDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYVVLSSLPWV
GKELYEKKDVEMDRLLNQIDGYLKRRLKTHVSMLQVWTAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPAHMPDCQYPMPRVIFRMFDYTDAPEG
PVMPGSHSVERFVIEDNLHNIIKSHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPCPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMMYMRLDTMNTTCIDRLLNWFSHH
LSNFQFRWSWDDWTDCLALDADKPKPKFVKEVLEKCMRLSYHQRIVDIVPPTFTALIPAD
PIFFYKYQDEANSALPGYAVAITVGNAIKNRASNEEILTVLKDVPNPNQEDDDDEGEGFN
PLKIEVFLQTLLHLAAKSFSHSFSALAKFHEILKVLTDCDEGKLHILRVVYEVWRNHPQM
ISVLVDKLIRTQIVDCAAVANWLFSPSMAHEFTRFYVWEILHSTIRKMNKHVQKIQKELE
EAKDKLERQQHKKQKDSGDEEDMEKNSEDEDGQLEEQIERLQEKVESAQSEQKNLFLVIF
QRFIMMLTEHLVRCETGSVDFSTPWYKNCIERLQQIFLMHHVTIQQYMGTLENLLFTAEL
DHHILAVYQQFCALQL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaagacggcacagtgacggagatgatggaggccagtctcacaaaagaaggaga
acgtctgagcccattgagattgaggatcgcctggaatcactgatatgtcgagtgggagaa
aagagtacctcttccctggaaagcaatttggaaggtcttgcaggtgtcttggaagccgac
ctccccaattacaaaaacaaaatcctccgcattttgtgtgctgtggctcgacttctacct
gagaagctgaccgtgtacacaacattagtgggccttctcaatgccaggaactacaacttt
ggcggggagtttgtggaggccatgattcgacaactcaaagaaaccttgaaggccaacctg
tacaccgaagcgctttacctagtgcgcttcctctgtgacctggtgaactgccacgtgatt
gctgccccctccatggtggccatgtttgagaactttgttagtgtcactcaggaggaagat
gtgccacaggtgcgctcggactggtttgtctatgttgtactctccagtctcccctgggtt
gggaaggaactctatgagaagaaggacgtggagatggacaggctcctaaaccagattgac
ggttacctcaagaggcgactgaagactcatgtctccatgcttcaggtttggacagcagag
aagccacacccacaagaggagtatctggactgcctgtgggctcagatccagaagctgaag
aaggaccgctggcaggagcgccacatcctgcggccgtacatcgcctttgacagcgtactg
tgtgaggccctgcagcacaacctgccacccttcaccccgcctgcccacatgcccgactgc
cagtaccccatgccccgcgtcatcttccgcatgttcgactacaccgatgcccccgagggt
cccgtcatgccaggcagccactctgtggagaggtttgtgattgaggataaccttcataac
atcatcaagtcccactggaaagagaggaagacctgtgctgcgcagttgctcagctatcca
gggaaaaacaagatcccactcaactatcacattgtggaggtgatctttggagagctcttc
cagctgccctgtcccccccacatcgacgtcatgtacactacactgctcatcgagctctgc
aagctgcagccaggctccctgcctcaagttttggcccaagccacagagatgatgtacatg
agactggacactatgaacactacttgcatagaccgactcctcaactggttctcccaccat
ttgagtaactttcagttcagatggagctgggacgactggacggactgtttagcgctggat
gcagacaagcccaagcccaagtttgtcaaggaggtactggagaaatgcatgaggctctcc
tatcatcagcggatagtggacattgtcccgcccactttcacagccctcatcccagccgac
cccatcttcttttacaaataccaagatgaggccaacagtgcactgccaggctatgccgtg
gccataacggtgggcaacgccatcaagaaccgggcctccaacgaggagatcctcaccgtg
ctcaaagacgtgccaaaccccaaccaggaagatgacgacgatgagggtgagggcttcaac
cccctaaagatagaggtgttcctgcagaccctcctccatctggctgccaagtccttcagc
cattccttcagtgccctggccaagttccatgagattctgaaggtcctgacggactgtgac
gagggcaagctacacatcctccgggtggtctacgaggtctggaggaaccacccacaaatg
atctctgtgctggtggacaagttgatccgtacacagattgtggactgtgcagctgtagcc
aactggctcttctccccaagcatggctcatgaatttaccaggttttacgtgtgggagatt
ctgcactccaccatccgtaagatgaacaaacacgtccagaagattcagaaagagctggag
gaggccaaggataagctggagaggcaacagcataagaagcagaaggacagtggcgatgag
gaggacatggagaagaacagtgaggatgaggacggtcagctggaggagcagatcgagcgt
ctgcaggagaaggtggagtcggcccagagtgagcagaagaacctcttcctggtcatcttc
cagcgcttcatcatgatgctgacggagcacctggtgcgctgcgagacaggcagtgtggac
ttcagcacgccctggtacaagaactgcatcgagaggctgcagcagatcttcctcatgcat
catgtgaccatccagcagtacatggggaccctggagaacctgctgttcaccgccgagctt
gaccaccacatcctagctgtttaccagcagttttgtgccctgcagctctga
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