Salvelinus fontinalis (brook trout): 129828865 Help Entry 129828865         CDS       T11136                                  Symbol col1a1b Name (RefSeq) collagen, type I, alpha 1b   KO K06236   collagen type I alpha Organism sfon  Salvelinus fontinalis (brook trout) Pathway sfon04510   Focal adhesion sfon04512   ECM-receptor interaction sfon04518   Integrin signaling sfon04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sfon00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     129828865 (col1a1b)    04518 Integrin signaling     129828865 (col1a1b)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     129828865 (col1a1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     129828865 (col1a1b)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sfon00536]     129828865 (col1a1b) Glycosaminoglycan binding proteins [BR:sfon00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    129828865 (col1a1b) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  129828865 NCBI-ProteinID:  XP_055746100 LinkDB All DBs Position 30:24288098..24311176 Genome browser AA seq 1460 aa AA seqDB search MFSFVDIRLALLLSAAVLLARGQGEDDSGFGSCSLDGQQYNDKDVWKPEPCQICVCDSGT VMCDEVICEDTTDCADPIIPDGECCPICPDDSESEDPQVPAVPEPEGPQGGDGPKGDDGP EGVPGNDGVDGQPGLPGPPGPPGPPGLGGGSFSPQMHHGYDQKSGGGQAQMGPMGPMGPR GLAGPPGNTGPPGHHGPPGEPGEPGGSGPMGERGAMGPHGKNGDNGEPGRSGRPGERGSA GPQGGRGTPGTPGLPGIKGHRGFNGMDGAKGDGGPAGPKGEGGSPGSSGNSGAMGARGLP GERGRPGPAGSSGARGNDGNSGPAGSNGPTGPAGAPGFPGGAGAKGETGPQGGRGSDGPQ GSRGEPGNPGPAGAAGPSGAPGGDGQAGGKGSTGAAGISGAPGFPGTRGPAGPPGSVGGP GPKGNHGEHGAQGTKGEPGVKGEPGSAGPGGPPGPSGEEGKRGARGEPGGAGGVGPPGER GMAGMRGFPGSDGAAGGKGGPGERGANGPMGAQGASGEAGRPGEPGMPGSKGMTGSPGSP GPDGKVGPAGITGNDGRSGPPGSSGARGQPGVMGFPGPKGPAGDNGKPGERGEAGAVGGL GAPGKDGDSGAPGPQGPAGSQGEKGEGGPAGPNGFQGLPGTQGATGEPGKAGEQGGPGEV GGPGPSGSRGDRGFPGERGGIGSAGPAGPRGANGSPGNDGARGESGAAGTPGGMGAPGLQ GMPGERGSGGNSGAKGERGDGGPKGADGGPGKDGMRGMTGPIGPPGPTGAHGEKGEGGLG GPPGPTGGRGSPGERGEHGAPGPAGFAGPPGADGQPGNKGETGNNGPKGEAGAPGPGGPV GGPGPQGPSGNAGTKGTRGAPGPPGASGMPGPGGRVGPPGGSGAPGPAGPPGPAGKEGQR GGRGETGNAGRPGEAGAAGPPGPSGPSGAKGNDGAMGAPGTPGPGGIAGQRGIVGGPGGR GPSGTAGTPGTAGEPGKQGPGGPVGERGSPGPMGPPGLSGAPGEAGREGSTGHDGVSGRD GPPGPKGDRGENGNAGSPGAPGPPGAPGPSGASGKSGSRGESGPAGPAGPNGPAGGRGGL GPAGARGDKGEAGEGGERGHKGHRGLNGMPGLPGPSGSSGESGPAGLNGPSGPRGPHGSS GSTGKDGMNGLPGPIGPPGPRGRNGEMGAAGAPGSPGLPGPPGPAGGGFHVAPIYNQEKG PDPMRGGGGYHYRADEPDMMNDRDMEVDTTLKSLSQKVENIRSPEGSQKNPARMCRDIRM CHPEWKSGQYWVDPNQGSPLDAVQVYCNMETGQTCVHPSQDTVPMKNWYTSKNIREKKHV WFSESMDNGFQFQYGSEGSNPEDVNIQLTFMRLMSNEASQNVTYHCKNSIAYMDEATGNL KKALLLQGANEIEIRAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAP MDVGAPDQEFGVEVGPVCFV NT seq 4383 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggatattcggttagcgctgttgctaagcgcagcagtgctattggca agaggtcaaggagaggacgatagtggattcggcagctgctcgttggacggccaacagtac aacgataaggatgtatggaaaccagaaccctgccagatctgcgtctgcgacagcggaacc gttatgtgcgacgaagtgatttgcgaggacacaaccgactgcgccgaccctatcatcccc gacggcgaatgctgtcctatctgccccgatgactccgagagcgaggatccccaggtacca gcagtgcctgagccagagggaccacagggaggtgatggacccaagggtgatgatggtcct gagggagttccaggtaacgatggcgtggatggccagcctggcctgcccggccccccaggc ccccctggacctcctggccttggcggcggaagcttctctcctcagatgcaccatggttat gaccagaaatccggcggtggccaggcccaaatgggaccgatgggccctatggggcctcgt ggtctcgctggcccaccaggcaacactggtccccccggtcaccatggtccccctggcgag cccggtgagcctggtggttctggtcccatgggtgaacgtggtgcaatgggcccccatggc aagaacggagataatggtgagcctggcaggtctggtcgccccggtgagcgtggctccgct ggccctcagggtggtcgtggaacccccggaactcctggcctccccggcatcaagggacac agaggattcaacggtatggatggtgccaagggagacggtggcccagctggccctaaggga gagggtggttcccctggatccagtggcaactccggtgctatgggtgcacgtggtcttcct ggtgagagaggccgccctggacccgctggctcttctggtgctcgtggtaacgatggtaac tctggtcctgctggatccaatggacccactggcccagctggtgcccctggattccccgga ggtgctggagctaaaggagagactggtcctcaaggaggacgtggctcagacggaccccaa ggatctcgtggagagcccggtaaccccggacccgctggtgctgctggaccctctggtgcc cctggaggtgatggccaagcaggaggcaagggttccactggtgctgctggtatctctggt gctcctggtttcccaggaactcgtggacccgctggaccccctggatctgttggtggcccc ggccccaagggtaaccatggtgagcacggagcccaaggcaccaagggagagcccggtgta aagggagagcctggttccgctggtcccggaggaccccctggaccctctggtgaggaggga aagagaggtgcccgtggtgagcccggtggagctggtggtgttggaccccctggagagcgt ggtatggctggtatgcgtggtttccccggctctgatggagctgccggtggcaagggtggc cctggtgagcgtggagccaatggaccaatgggagcccaaggtgcctctggtgaggctgga cgtcctggcgagcctggcatgcccggatccaagggtatgactggtagccctggcagcccc ggacccgatgggaaagttggccctgctggtatcactggaaacgacggtcgctccggaccc ccaggctcctcaggagccagaggtcaacctggagtcatgggattccccggacccaaagga cctgctggtgacaatggcaagcccggtgagagaggtgaagctggagctgttggtggtctt ggtgctcctggtaaagatggtgactctggtgctcctggaccccaagggcctgctggttct caaggagagaaaggagagggcggccccgccgggcctaatggattccaaggtctgcctgga actcagggagctactggtgagcctggcaaggctggtgagcagggtgggcccggtgaggtt ggaggtcccggccccagtggatccagaggtgacagaggtttcccaggcgagcgtggtggc atcggatctgctggccccgctggaccccgtggagccaatggttctcctggtaacgatggt gctaggggtgagagtggtgctgctggtacccctggcggtatgggagctccaggtctgcag ggaatgcccggagagcgcggctcaggtggcaactccggtgccaagggagaacgaggtgat ggtggccccaagggagccgacgggggcccaggaaaagacggcatgcgaggtatgactgga cccatcggaccccctggacccactggtgctcatggagagaagggtgagggtggtctcggt ggcccccctggccccactggaggtcgcggttcccctggtgagcgtggtgagcatggtgcc cctggacctgctggattcgctggaccccctggtgctgatggtcagcctggcaacaaggga gagaccggtaacaacggccccaagggtgaggctggtgctcccgggcccggtggacctgtt ggtggtcccggacctcagggtccctctggtaatgctggtactaaaggaactcgtggtgca cctggaccccctggtgcttccggtatgcctggtcctggtggaagagttggtcctcctggt ggaagtggagcccccggacccgcaggcccccccggccccgccggtaaagagggacagagg ggtggacgtggtgaaactggtaatgctggtcgccccggtgaggctggagccgccggaccc ccaggtccctcaggaccctctggagctaagggtaatgatggtgcaatgggagccccagga acccctggacccggaggtattgctggacagcgtggtattgtggggggccccggaggaagg ggacccagcggtactgcaggaacaccaggaacagctggagagcccggtaagcagggacct ggcggcccagtcggtgagcgtggctcccctggccccatgggaccccctggcctgtctggt gcgcccggtgaagctggtcgtgagggttccactggtcacgatggtgtttccggacgcgat ggaccccccggccccaagggtgaccgtggtgagaatggtaatgctggttcccctggtgct cccggacctcccggtgcccccggtccctctggtgcttctggcaagtccggtagccgcgga gagtctggtcctgctggtcccgctggccctaacggtcctgctggtggtcgtggtggtctt ggacctgctggtgctcgtggagacaagggagaggctggagagggtggagagagaggccac aagggacacagaggtttaaacggcatgcccggtcttcctggaccctctggttcctctggc gagtctgggcctgctggacttaacggaccttctggaccccgaggaccccacggttcttct ggctccaccggcaaagatggcatgaacggtctgcctggacccatcggaccccccggaccc cgtggtcgcaacggagagatgggagcagctggtgctcctggttctcctggtctgcccgga cctccaggtcctgctggcggcggcttccatgtcgcaccgatctacaaccaggagaaggga cctgaccccatgcgaggaggaggaggataccactaccgcgctgacgagcctgacatgatg aacgaccgtgacatggaggtggacaccaccctgaagagcctcagccagaaggtggagaac atccgcagccccgagggatcccagaagaaccctgcccgcatgtgccgtgacatcaggatg tgccaccccgagtggaagagcggccagtactgggtggaccccaaccagggctctcctctg gatgctgtccaggtctactgcaacatggaaaccggacagacctgtgtccatccatcccaa gataccgtccccatgaagaactggtacaccagcaagaacatcagggagaagaagcacgtc tggttctcagagtctatggacaatggcttccagttccagtatggtagcgagggatccaac ccagaagacgtcaacatccaactgaccttcatgcgcctgatgtccaacgaagcgtcccag aacgtcacgtaccactgcaagaacagcattgcctacatggacgaggccacaggcaacctg aagaaggccctgctgctccagggagccaacgagatcgagatcagagctgagggcaacagc cgcttcacatacagcgtcagcgaggacggctgcacgtcacatactggcacatggggcaag acagtcatcgactacaagacatcaaaaacatctcgcctgcccatcattgacatcgctcct atggacgttggtgcacctgatcaggagtttggcgtcgaagttggccccgtctgcttcgta taa

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