Salvelinus fontinalis (brook trout): 129829104
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Entry
129829104 CDS
T11136
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
129829104 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfon03400
]
129829104 (msh2)
DNA repair and recombination proteins [BR:
sfon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
129829104 (msh2)
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NCBI-GeneID:
129829104
NCBI-ProteinID:
XP_055746578
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Position
30:34752103..34770171
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AA seq
928 aa
AA seq
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MAVQPKQSLSMDAATEHGFLTYYFSMPEKPDTTFRVFDRGDYYTVHGTDAQFAAKEVFKT
NGVIKTLGSGSRKLESVVLSKTNFEALVRDLLLVKQYRVEVYRNQSKTKDHSWQLEYKAS
PGNLSQFEEVLFGGAEGRGAGSAGVVAVRLAVGGDGQRVVGVGYVDASLRTMGVCEFLDG
ETFCNLEALLVQLSPKECLLPQGDNTDNIRQVVQRGGVLLSDRKRTEFSGKDMTQDLNRL
LRTRKGEANACNVLPELDKPVAMSCLAAVVRYLELLSDQSNFSSFSLTTLDLSQYMRLDN
AAVQALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIEERLDLVE
CLVNDGEARQTLQDDLLRRFPDLHRLSKKFHRLSATLQDCYRGYQAVGQIPALLLALEKH
QGSHQMLLEAVFISPLRDLQADFIKYQEMIETTLDMNQVEHHEFLVKASFDPVLSELREK
MDTLENSMQSVLNSAARELGLDAGKTVKLECNNVLGYYLRVTCKEEKSLRNNKKFTTLDV
QKNGVRFTNSKLSSLNEDYTRNREEYEEAQNAIVKEIISIAAGYVDPLQSLSDVIAQLDA
VVSFSVASVSAPIPYVRPRLLAVDRRRLELQQARHPCLESDADTAFIPNDISFIQGEQSF
YIITGPNMGGKSTFIRQVGVISLMAQIGCFVPCEKAELSMIDSCLCRVGAGDSQLKGVST
FMSEMLETAAILRSATKNSLIIIDELGRGTSTFDGFGLAWAISEHIASKIGCFCLFATHF
HELTALATHHPTVRNLHVTALTTQHTLTMLYRVKPGVCDQSFGIHVAELACFPPAVVAMA
KQKAAELEEFQEEPSGEEGPEAKKRRSDKQEGEGLIQSFLEKVKSLPAVTMTDQEVKAEL
KAMKQELVAHNNAYITELLARSAPIHST
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaaacagagcttgtccatggacgctgctaccgaacatggcttcctt
acctactacttttccatgccggagaagccagacaccaccttcagggtcttcgaccggggt
gactactacacggtgcacgggaccgacgctcagttcgccgccaaggaggttttcaagacc
aacggagtcatcaagaccctgggctcaggtagccgcaagctggagagtgtggttctcagc
aagacaaactttgaggctctggtcagagacctgctgctggtgaaacaatacagagtggaa
gtctacaggaaccaaagcaaaaccaaggatcacagctggcaactggagtacaaggcgtct
ccagggaatctgagccagtttgaggaggttctatttggcggggctgagggaagaggggct
ggctcagcgggggttgtggccgtacggttggctgtcgggggtgacggacagcgcgtggtg
ggcgtgggctatgtggacgcgtccctaaggaccatgggagtgtgtgagttccttgatgga
gagactttctgtaacctggaggctctacttgtgcagctgagccctaaggaatgtctgcta
ccacagggtgacaacactgataacatacgacaggtggtgcagcgtggcggtgtgttgctg
tcagacagaaagagaacagagttcagtggtaaagacatgacccaggacctcaaccgactg
ctacggaccaggaaaggggaggccaacgcctgcaacgttctgcctgaactagacaaaccg
gtagctatgtcatgcctggcagcagtggttcgttacctggagttgctgtctgaccaatca
aacttcagctccttcagcttgacgacccttgacctgagccagtacatgaggctggacaac
gctgctgtacaagccctcaacctctttcagggttctcccgatgacaccagtggagcccac
tcattggccgggctactgaataagtgccgcacccctcagggccagcgattggtcaaccag
tggattaaacagccactcatggacaagaacaggattgaggagagactggatctggtagag
tgtctcgtgaatgacggtgaggccagacagactcttcaggacgatctgttgcggcggttc
ccagatctccaccgcttgtccaaaaagtttcaccgactctcggcaacactgcaggactgt
taccgcggttaccaggccgtgggccagatccctgcactcctgttggctctggagaaacac
caaggaagtcaccagatgctgttggaggcagtgttcatctctcctctcagagacctgcag
gctgacttcatcaagtaccaggagatgatcgaaactacactggatatgaaccaggtggag
caccatgagttcctggtgaaggcgtcgtttgacccggtgctctctgagctgagggagaag
atggacacactggagaacagcatgcagagcgtactgaacagcgcagcacgggaactaggt
ctggatgctggtaagacagtgaagttggagtgtaacaatgtgttggggtattacctgagg
gtgacctgtaaagaggagaagagtctgaggaacaacaaaaagttcacaacgctggacgtc
cagaagaatggagtccggttcaccaacagtaagctgagttctttgaatgaagactacacc
aggaacagagaggagtatgaggaggctcagaacgccatcgttaaggagatcatcagcatc
gccgcgggctacgtggaccccctgcagtcgttgagtgacgtcatcgcccagctggatgcg
gtggtcagcttctctgtggcgtcagtctctgcccccatcccctacgtcaggccacgcctc
ctggctgtggaccgcaggcgcctggagctccaacaggccagacacccctgcctggagtcg
gacgcagacacagccttcatacctaatgatatatccttcatccagggggagcagagcttc
tatatcatcacaggtcctaatatgggcgggaagtctaccttcatcaggcaggtgggcgtg
atctctctgatggctcagattggctgctttgtcccctgtgagaaggcggagctaagcatg
attgacagctgtctgtgccgtgtgggggcgggagatagccagctcaagggcgtgtctaca
tttatgtcagagatgctggagaccgcagctattctccgctctgccacgaagaactctcta
ataataatcgatgagttgggtcgaggaacatctacattcgatggctttggtctggcctgg
gccatcagtgaacacattgcctctaagattggctgcttctgtctgtttgccactcacttc
cacgagcttacggcgttggccacacaccaccccaccgtccgcaacctgcacgtcaccgct
ctgaccacgcaacacacactcaccatgctctacagggtcaaaccaggtgtgtgtgaccag
agttttgggatccatgtggcggagttggcgtgtttcccaccggcggtggtcgccatggca
aagcagaaggctgcagaactggaggagtttcaggaggagcctagtggggaggaggggcca
gaggccaagaaacgacgcagcgataaacaggagggagagggtttgatccagtcgtttctg
gagaaggtgaaatctctgccggcagtcaccatgactgaccaggaggtgaaggcggagctt
aaagccatgaagcaggagcttgttgcccataacaacgcttacatcactgagctcctggca
cgctccgcccctatccactcaacctga
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