Salvelinus fontinalis (brook trout): 129830306
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Entry
129830306 CDS
T11136
Symbol
xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
129830306 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfon03400
]
129830306 (xpc)
DNA repair and recombination proteins [BR:
sfon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
129830306 (xpc)
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
129830306
NCBI-ProteinID:
XP_055748761
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Position
31:43029170..43039925
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AA seq
895 aa
AA seq
DB search
MAKRKESADTAVKTDTKKLKKVAKGKAGGLRAKKENGAETEKVPRKAKHKSHLSKPIVGD
TTENHTSKYFQDKTPVKEEPADMSPESDIIPPFIRARKDTVKPVKKEEEDEDSEEDEDWE
EVEGPVEPEEPALPSQPVEIEIETPDIIHKRQKREKRKAEFETYLRRMMNRFNKDVVEDT
HKVHLMCLLANGMFRNRLCSTPDLLAISLSLLPTHFAMVAKERIDTNYVSGLLKWFGATF
TLNPELPCEERPDPQGLLERRLGSLTARDHQEMTHLFLLMLRSLQLFCRLVLSLQPLSLK
PPSAKSKAKNSGSPPRKSPSQKKPPKESPSEPKVTPGSKRPAGGKAERGGKKAKKKEAGE
TGKAVSVGQKPKNSKRRSIASKVSYKEESSEGEGPSDGEEFQLTNEEDSEDSEGAVRAKK
VKGRKNMGKSTAPQKTSSGGKKKVKSEEEDDDWEGNEEEGEEEQGMKRGKRKEGKGADEW
LEVYLEKTGCWVCVEVLQGVGQPQLCSKQATHPMTYVVAVDGDGHLKDLGSKYDPTWMTS
TRKRRVDEEWWEVTLEPFLGPESERDVQEDKELQAKLLDKPLPTSIAEFKNHPLYALKRH
LLKYEALYPSTAAILGYCRGEPVYSRDCIHTLHSRDTWLKEARTVRLGEEPCKMVRGFSN
RSRKVRMASEQKDKDDLALFGEWQTEEYQPPVAVDGRVPRNDFGNVYLFKPCMQPVGCVH
LRLPNLQRVAKKLDMDCAAAVTGFDFHGGYSHAVTDGYIVCEEHEEILRAAWVEDQEIQR
QKEKEKREKRAVANWTLLVKSLLIRERLQRRYGKKGPTPGGGLDQLKSQDREGVEGLSSE
EEGEGGPNTASAALAQAWPQNRQGEQDSGTGGSSKTTSKRQKRGQEKHLFPFEKV
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgtaaagagtctgcagacacagcagtgaagactgacacaaagaaactgaag
aaggttgcaaaaggcaaagctggaggactaagagccaaaaaagagaatggagcggaaacg
gagaaggttccgagaaaagccaagcacaaatcccatctctctaaacctatagtaggggac
acaaccgaaaaccacaccagcaagtacttccaggacaagactccagtgaaggaggagcct
gctgatatgagtcctgagagtgatatcatccctccttttatcagagccagaaaagacaca
gtaaagcctgtgaaaaaagaagaagaagatgaggacagcgaggaggatgaagactgggag
gaagtggaaggtccagtggaaccagaagagccagccctgccctcacagcctgtggagata
gagattgagaccccagacatcatccacaaaaggcagaaaagggagaagaggaaggcggag
tttgagacctatttgcgacgcatgatgaaccgcttcaacaaagatgtggtggaggacaca
cacaaggtccacctcatgtgtcttttagccaacgggatgttccggaaccggttgtgtagt
acaccggacctgctggccatcagcctgtctctgctgcccacccactttgccatggtggcc
aaggaacgcattgacaccaactacgtctctggcctgctcaagtggtttggggcgacgttc
acgcttaacccggagcttccctgtgaggagaggcccgacccacagggcctgctggagagg
aggctgggcagcctcaccgctagagaccaccaggaaatgacacatctgttcctattgatg
ctgaggtcgttacagctcttctgtcgactggtgctctctctgcagcccctgtcactgaag
cccccgtcagccaagagcaaggccaagaactcaggcagtccgcctaggaagagtccatcg
cagaagaaacctccaaaagagagcccctcagagcccaaggtaaccccagggtccaagaga
ccggcaggggggaaggccgagagaggagggaagaaggcaaaaaagaaagaggccggggag
acgggaaaggctgtgtcggtgggacagaaacccaagaactccaagcgccgcagcatagcc
tcgaaggtgagctacaaagaggagagcagtgaaggggaggggccaagtgatggggaggag
ttccagctgaccaatgaggaagacagtgaggactctgagggagcagtcagagccaagaaa
gtaaaaggacgtaagaacatgggcaagagtacagctccacagaaaacaagtagtggaggc
aagaagaaagtgaagagtgaagaggaggatgacgattgggagggaaacgaagaggagggg
gaggaagagcaggggatgaagcggggcaagaggaaggaggggaagggtgcagacgagtgg
ctggaggtgtacctggagaagactgggtgctgggtctgtgtggaagtgctgcagggcgtg
gggcagcctcaactgtgctccaagcaggccacccatcccatgacctacgtggtagccgtg
gacggggacggtcacctgaaggatctgggcagcaagtatgaccccacctggatgacctct
accagaaagcgccgggtggacgaggagtggtgggaggtgacgctagagccattcctcggc
cctgaatccgagagggacgtccaggaggataaagagctccaggcgaagttgctggacaag
ccgttgcccacgtcgatagcagagttcaaaaaccacccgctgtacgccctgaagagacat
ctactgaaatatgaagctctctacccctccacagcggccatcctcgggtactgcagggga
gagcctgtctattccagggactgtattcacacgctacactcccgagacacctggctgaag
gaggcgcgcaccgtccgtctaggagaggagccctgcaagatggtgagagggttttccaat
cgctctcggaaagtcaggatggcgtcagagcagaaggacaaagatgacctggctctgttt
ggtgaatggcagacagaggaataccagcccccagtagctgtggatggcagagtgcctcgt
aacgacttcggcaacgtttacctgttcaagccctgcatgcagccagttggctgtgtccac
ctgcgtctgcctaacctccagagagtggctaagaagctggacatggactgtgccgctgct
gtcactggctttgactttcacggtggctactctcatgctgtaacggacggctacattgtg
tgtgaggagcatgaggagatcctgagagcagcctgggtggaagaccaagagatccagaga
caaaaggagaaagagaagcgggaaaagagggcagtggctaactggactctgctggtgaag
agcctgctgatcagggagagactacagcgtcgctatgggaagaaaggcccaacccccgga
ggaggcctggaccaactgaagagccaggatagggaaggggtagagggtctatcgtctgaa
gaggaaggggaaggcgggccgaacacggcttctgccgccctggcacaggcctggccccag
aacagacagggggagcaggacagtggcacggggggatcctccaaaactacatccaaacgg
cagaaaaggggccaggaaaagcaccttttcccctttgagaaagtatga
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