Salvelinus fontinalis (brook trout): 129830353
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Entry
129830353 CDS
T11136
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04510
Focal adhesion
sfon04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129830353
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129830353
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sfon00536
]
129830353
Glycosaminoglycan binding proteins [BR:
sfon00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129830353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
129830353
NCBI-ProteinID:
XP_055748845
LinkDB
All DBs
Position
31:complement(44293727..44323432)
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AA seq
1489 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLISIVRCQEEDDQEAGSCIQDAHRYNDKDVWKPEPCRICVC
DSGSVLCDEIICEEIRECANPIIQPRECCPICPADASAPTEAVFGAKGQKGAPGEIADVV
GPNGPAGPMGPSGEQGPRGEAGAKGDKGNVGPRGRDGEPGTPGNPGTPGPPGPNGTPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGSPGPSGAPGPQGFQGNPGETGEPGPA
GALGPQGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLD
GSKGEGGAAGAKGEGGAPGENGAPGPMGPRGLPGERGRPGPSGSAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGARGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPI
GPQGGPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVP
GVGGPKGGTGDPGRAGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGANGEPGKAGEKGLVGRQGLIGLSGKDGETGAAGPNGPAGPAGERGEQ
GAAGPSGFQGLPGPAGSPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGAGSQGLQ
GPRGLPGTPGTDGPKGAIGPTGGAGSQGPPGLQGMPGERGAGGILGAKGDRGDNGEKGPE
GAPGKDGSRGLSGPIGPPGPAGPNGVKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFA
GPPGADGQPGAKGEFGEAGQKGDGGAPGPQGPSGAPGPVGPTGVSGSKGTRGAQGAAGAT
GFPGAAGRVGSPGPNGNPGAAGPAGPAGKDGPKGVRGDAGTPGRQGDAGLRGVAGAPGEK
GDAGEDGPPGPDGPSGPHGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGATGAGGDR
GPPGPVGPPGLSGPAGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAP
GPVGPLGKQGDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFT
GLQGLPGPPGSAGDQGAAGPAGPSGAKGPPGPVGPTGKDGSNGTPGPLGPSGPRGRSGET
GPAGPPGNPGPPGPPGSPGPGIDMSAFAGLSQPEKSPDPMRYMRADEASSSLRQHDVEVD
STLKSLNYQIENLRSPDGSQKNPARTCRDIKLSHPEWKSGDYWVDPNLGSTADAIKVFCN
METGETCVYPSIAKVPHKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFL
RLLSTEASQNLTYHCKDSVAYMDASTGNLKKALLLQGSNDVEIRAEGNSRFTYSVVEDGC
KKHTGQWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta
atatccattgtcagatgccaggaagaggatgaccaggaggcaggcagctgcatccaggat
gcccatcgctataacgacaaggatgtgtggaagccggagccgtgtcgtatctgtgtgtgt
gacagcgggtcagtgctgtgtgatgagatcatctgcgaggagatcagagagtgtgccaac
cccatcatccaacctagagagtgctgccccatctgccctgcggacgccagcgcccccact
gaggcggtgtttggtgctaagggccagaaaggggcaccaggcgagattgcagatgttgta
ggaccgaatggaccagcaggccctatgggcccctcgggcgagcagggaccacgtggagaa
gctggcgctaagggtgataagggaaatgttggccccagaggcagagatggtgagcctgga
acccccgggaaccccggaacccctggccctcctggacccaacggaaccccaggtcttggc
gggaacttcgctgcgcagatggctggtggattcgatgagaaagctggaggcgcacagatg
ggagtgatgcaaggacctatgggccctatgggtccccgtggttcacctggcccttctgga
gcccctggcccacaaggtttccaaggtaaccccggagagactggagagccaggccctgct
ggtgcactgggaccccaaggaccccctggaccttctggcaaaccaggaagtgatggtgag
gctggcaaacctggaaaggctggtgaacgtggacctgcaggacctcagggagctcgtgga
ttccccggaactcctggtcttcccggaatcaaaggacacagaggtcatcctggtcttgat
ggatctaagggagagggtggtgctgctggagccaagggtgagggtggcgctcccggagag
aatggcgcccctggaccaatgggaccacgtggtctgcctggcgagagaggccgtcccgga
ccttctggctctgctggtgcccgtggtaatgatggcttgcctggccctgctggtcctcct
gggcctgtcggacctgctggagcacctggtttccctggatctcctggttccaagggagaa
gctggccccaccggtgcccgtggaactgaaggcgcacagggaccccgcggagaggctggc
acacccggatctcccggtcccgctggcgcctctggcaaccctggtactgatggtatcccc
ggagctaaaggatctgctggcgcttctggtattgctggtgctcctggtttcccaggaccc
cgtggcccccccggacctcagggagcaacaggacctcttgggcccaagggccagtcggga
gaccccggtattcctggtttcaaaggagaggctggacccaagggagagcttggccctatt
ggtccccaaggcggccctggccccgctggcgaggagggcaaaagaggagcaagaggagag
ccgggtgctgctggaccactgggacctcctggcgagagaggagctcccggtaaccgtggt
ttcccgggtcaggatggtcttgctggtgctaagggagcccctggtgaccgtggtgttccc
ggcgtgggtgggcctaagggaggcactggtgaccccggccgcgcaggagagcctggtctt
cccggagccagaggtctcactggtcgccctggagatgctggtcctcaaggcaaagttggt
cctggtggtgctgctggggaggacggtcgccccggcccacctggtcctcagggagcacgt
ggccagcctggtgtgatgggattccccggaccaaagggagccaatggtgagcctggcaag
gcaggagagaagggtctcgtgggtcgtcaaggtctgataggtctgtctggtaaagatggt
gagactggcgctgctggacccaacggccctgctggacctgctggagagagaggagagcag
ggagctgctgggccatctggcttccagggtctgcctggacctgctggctccccgggagag
ggaggcaagcctggtgatgcgggtgttcctggagaggctggtgctgctggcgctacggga
cccagaggcgagcgtggtttccctggtgagaggggcggtgcaggatctcagggtctgcag
ggacctcgtggacttcccggaactcccggaaccgatggacccaagggagccattgggcca
actggtggtgctggatctcagggaccccccggcctgcagggtatgccaggagagagagga
gctggtggtatcctcggagccaaaggtgacagaggtgacaacggcgagaaaggacctgag
ggcgctcctggaaaggacggttccagaggcttgtctggtcccattggtcctcctggccca
gctggtcccaacggcgtgaagggtgagggcggaccttctggcccaactggtgctgctggt
gcccgtggtgctcctggtgaccgtggtgagggtggtcctcctgggcctgctggcttcgct
gggcctcctggtgcagatggtcagcctggagccaagggagagtttggcgaggctggacag
aagggagatggtggtgcccctggacctcagggaccctctggggcccctgggcctgtgggt
cccactggcgtttctggatctaaaggaacccgcggtgcccagggtgccgctggtgctact
ggtttccctggtgctgctggaagagttggttctcccggtcccaacggtaaccctggtgct
gctggccccgctggtcctgctggtaaagacggtcctaagggagttcgcggtgacgctggc
accccaggaagacagggagacgctgggctgcgtggagttgctggagcccctggcgagaag
ggagatgctggagaagatggtccccctggtcctgatggtccttcaggtccccacggtctg
gctgggtctcgtggtattgttggtctgcctgggcagcgtggagagagaggcttccctgga
cttcctggaccttctggagagcccggtaagcagggagctactggtgctggtggtgaccgt
ggaccacctggccctgtgggaccccctggactgtctggacccgcaggagagcccggaaga
gagggcaacgctggatctgatggacccccaggtagagatggatccactggggtcaagggt
gagcgtggtaacactggtcctgctggtgctcctggtgccccaggcgctcccggtgccccc
ggccctgtcggccccctgggcaagcagggagacagaggagagggaggtgctcaaggacct
gccggacccgctggaccagctggcgctagaggaatggccggaccccaaggaccccgtgga
gacaagggagaggctggcgagacaggagagaggggacagaagggacaccgcggcttcact
ggtctgcagggtcttcccggacctcccggctccgctggagaccagggagctgctggacct
gccggacctagtggcgctaaaggaccccctggcccagtcggtcccactggtaaggatgga
tctaacggtacccctggacccctcggaccctctgggcctcgtggtcgttctggagagact
ggtcctgctggtccccctggtaaccccggaccccctggtcctcctggttctcccggccct
ggcatcgacatgtctgccttcgctggcctgtctcagcctgagaagtctccggatcccatg
aggtacatgagggctgatgaggcgtccagctccctgaggcagcacgacgtggaggtggac
tccacactcaagtccctcaactaccagatcgagaacctgcgcagccccgacggtagccag
aaaaaccctgcccgcacctgcagagacatcaaactgtcccaccccgagtggaagagcggt
gactactgggtggatcctaaccttggcagcacagctgacgccatcaaggtcttctgcaac
atggagactggcgagacctgcgtgtaccccagcatagccaaagtaccgcacaagaactgg
tggacaagcaagagcaaggaccgcaaacacgtctggttcggagagaccatgaatggagga
ttccacttcagctacgctgaggacggtaccaacgccgccagtatccagctgaccttcttg
aggctgctgtccacggaagcgtctcagaacctcacctaccactgcaaggacagcgtggct
tacatggacgcgtccacgggcaacctgaagaaggctctgctgctccagggctccaacgac
gtggagatcagagctgagggcaacagccgcttcacctacagtgtggtggaggacggctgc
aagaaacacacaggccagtggggcaagactgtcttcgagtacaaaacacagaagacctcc
cgtctgcccatcgtggacattgctcccatggacatcggaggagcagaccaggagttcggt
gtggacgtgggcgcagtctgcttcttgtaa
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