KEGG   Salvelinus fontinalis (brook trout): 129830725
Entry
129830725         CDS       T11136                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
sfon  Salvelinus fontinalis (brook trout)
Pathway
sfon03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129830725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sfon03041]
    129830725
Spliceosome [BR:sfon03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    129830725
 Complex C
   U5 SnRNP specific factors
    129830725
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML WDR90_beta-prop_4th NBCH_WD40 Beta-prop_SPT8 Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR75_2nd Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 129830725
NCBI-ProteinID: XP_055749347
LinkDB
Position
32:complement(11691479..11712387)
AA seq 348 aa
MIEPKKRPADMAVVPAGGVKRPRAELIAAAQSQQLVAMGPPRSSSLQAPIMLMCGHEGEV
YCCKFHPNGATLASSGYDRLILMWNVYGDCDNFATLKGHSGAVMELHYNTDGSLLFSAST
DKTVGVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKGAVHT
FQNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKMIYGMHGHGDSLTGLCLSSEGSY
LLSNSMDNTVRIWDVRPFAPKERCVKIFQGNIHNFEKNLLRCSWSADGSRIAAGSADRFV
YVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGASDKRLYMGEIQ
NT seq 1047 nt   +upstreamnt  +downstreamnt
atgattgagccaaagaagagaccggcggacatggctgtggttcctgccggtggagtcaag
aggcccagggccgagctgatcgctgcggcacagtcgcaacaactcgtggccatgggccct
ccccgcagctccagcctgcaggctcctatcatgttgatgtgtggccacgagggagaggtc
tactgctgcaagttccatcctaacggggccacactggcctcgtctggctatgacaggctc
atcttgatgtggaatgtgtacggggactgtgataactttgccaccctgaagggacacagt
ggtgctgtgatggagcttcactacaacacagacggcagcctgctgttcagcgccagcaca
gacaagaccgtgggagtgtgggacagtgagacgggcgagaggatcaagcgcctgaaaggt
cacacctccttcgttaactcctgctaccctgctcgccgcgggcctcagctcgtctgtacc
ggcagcgacgacggaaccgtcaagctgtgggacatccgtaagaagggggcggtccatacg
ttccagaacacctaccaggtgttagccgtcacattcaacgacaccagcgaccagatcctg
tctggaggcatcgacaacgacatcaaggtgtgggacctgaggcagaataagatgatctat
ggtatgcatggtcatggtgattctctgactggcctctgtctaagctcagagggatcctac
ctcctctccaactccatggacaacacagtacgtatttgggacgtccgtccgttcgctccc
aaggagaggtgtgtgaaaatattccaggggaacattcacaactttgagaagaaccttctg
aggtgttcctggtctgctgacggcagcaggattgcagcaggctcagctgacaggtttgtt
tatgtgtgggacaccacgtctcgtaggatcctgtacaagctgccaggccacgctgggtca
gtcaacgaggtcgccttccatcccgaggagcctattgtcctctctggcgccagtgacaag
agactctacatgggagagattcagtag

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