Salvelinus fontinalis (brook trout): 129831207
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Entry
129831207 CDS
T11136
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sfon00535
]
129831207
Proteoglycans [BR:
sfon00535
]
Extracellular matrix (ECM) proteoglycans
Others
129831207
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
Fn3_nematode
VWA_3
DUF4992
DUF4959
Motif
Other DBs
NCBI-GeneID:
129831207
NCBI-ProteinID:
XP_055750307
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All DBs
Position
32:36500750..36594631
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AA seq
1883 aa
AA seq
DB search
MQAIGLKTWVWSPLLCLVLISLLPVQAQGQVATPRRLRFKVLSATQLHVSWKEPKGDFES
YRFIYSTQSDAEETELEVTKKEAKVIIDFDPRKLYTVKVTAVKGAQKSKPLQGIFKKPDN
ENVQPQNVRPKNQKDTSVTEENNEISEEQFMCKTPAIADIVILVDGSWSIGRINFRLVRM
FLENLVSAFHVEFDKTRIGLAQYSGDPRIEWHLNTFTTKEAVIDAVKNLPYKGGNTLTGL
ALTFILENSYKPESGSRAGVPKIGILITDGKSQDDVKPPAQSLREAGIELFAIGVKNADE
KELKAIGSPPEETHVYNVADFSAMSSIVERLTRTVCDRVEQLDKAIKGDRGPEVTMASPR
DLVTSEVTARSFRVSWTHAPGTVEKYRVVYYPASGGQPEEKMVQGTVDTVVLNYLLSLTE
YQMAVFAIYASSASEALRGSATTLALPMVNNLELFDITHNTMRARWRVAEGASGYMILYA
PLTEGNDADEKEVKVAETVNEVELENLTPDTEYTVTVYAMYGEEASDPMTSQETTLPLTP
AGNLRFSNVDHSSARLTWEATSKKANGYRIMYVKTNGVQTNEMDVGRITTLLLRNLTSLT
EYTVAIFAIYDEGQAEPLTDSFTTKTVPEPLNLRSSEVSTESFRVTWEHSAHDVVLYRLT
WTPIRGGDTKEMLVNGKMNSHLLTGLRPITEYEVSLIAVFRNEEESNAVTLTESTVARTT
TTTKATTTTTTTQATTKAVVRLGVRNLLLSDHTTFSMEVSWELQDRNVRQYRVAYVTARG
DRAEETKMVPGGQNSLLLQPLLSDMEYKVTVTPVYADGDGPGVSRMGRTLPLSAPRNLRV
SEEWYNRFRITWDTPPSPTMGYRVVYNPISAPGPALETFVGEDVNTMLILNLMSGTEYGV
RVIASYTTGSSETLTGKARTLYLGVTNLNTYQVRMTSVCAQWGAHRHATLYRVVIESLLN
GYKQEARLGGGTTRHCFNDLTANTQYKISVYAQLQDTEGPAVSTTEKTFPVPTPAPTRPP
TTTAPPSIPSVKEVCKAAKADLAFLVDGSWSIGDDNFLKIIRFLYSTTGALDIIGPDGTQ
VAIVQFSDDARTEFKLNSYDNKERLLEAINRISYKGGNTKTGLAIRHVKDTIFTVGGGIR
RGIPKVLVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSGRHVFF
VDDLDAFKKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVEGMHGHVSGVSM
EPGTFNSFPCFRLHNNSLLAQPTKFIHPEGLPSDYTITMLFRLLPETPKEPFALWEILNK
DNEPLVGLILDNGGKTLTFFNHDYKGQFQTVTFEGPEIKKLFYGSFHKLHMAISKTSAKA
VIDCKLVGEKAINAAGNITTDGLEVLGRMVRSRGKKDSSAPFQLQSFDIVCSTSWASRDK
CCELPGLRKEEDCPAMPRACTCSQESKGPPGPTGPPGGPGIRGGRGDRGEPGAVGPIGPV
GDAGTPGLQGPPGPQGPSGRTIMGPPGGPGERGEKGAAGTPGIQGIPGSPGSPGRAGQTG
TRGLPGKDGPQGRTGPPGTIGTPGAPGSPGSSGPPGSLGNQGPPGPAGNKGEKGERGDLQ
SQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPVSVRTVPGPPGEPGRQGGPGPQGEQ
GPPGRPGFPGSNGENGQPGARGLSGEKGDKGSPGTGVQGPRGPVGPPGPTGQGRTGSQGP
SGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGEGGIGGDTSDRHNLPLVQLPP
NTYQNYDEVEEEDPYRYGEGGYPSEYYQPNYPAPRPVVPEDPALTQGDEVLRSPGIHRSY
RSLADKNDKKEEEGPGERKMVVP
NT seq
5652 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctataggactgaagacgtgggtatggagtcctctactctgtctggttcttatc
tctctcttacctgtgcaagctcagggtcaagttgccaccccacgaagacttcgtttcaaa
gtcctgagcgcaacccagctgcatgtgtcatggaaagaaccgaaaggagactttgaaagc
tacagatttatttatagcacacaatcagatgcagaggagactgaactagaggtgacaaag
aaggaagccaaagtgatcatagactttgaccccagaaagttgtacaccgtcaaggtcact
gctgtgaaaggtgctcagaagagcaagccacttcaaggaatatttaagaagcctgacaat
gagaacgtacagccccagaatgtacgacccaaaaaccagaaagacaccagtgtcaccgag
gagaacaatgagatatctgaagagcagttcatgtgtaagaccccggccatagcggatatt
gtgatcctggtggacggatcatggagtatcggacggataaacttccgtcttgtccgcatg
ttcctggagaatctggttagcgccttccatgtggagtttgacaagacacggataggtctg
gcccagtacagtggtgaccccaggattgagtggcacctgaacactttcaccaccaaagaa
gcagtcatcgacgctgtgaagaacctgccctacaaaggggggaacacactgacgggtctt
gcattaacgttcatcctggagaacagttataaacctgagtccggatcccgggccggcgtt
cccaaaattggaatcctgatcacagatgggaagtctcaagacgatgtcaaacccccggct
cagagtctgagagaggcgggaatagagctgtttgccattggtgtgaagaacgccgatgag
aaagagctgaaggccatcggctcgcctccagaggagacgcatgtctacaacgtggccgac
ttcagcgccatgagctctatcgtggagcgtctgaccaggaccgtctgcgacagggtcgaa
cagctcgacaaggccatcaaaggcgacagaggcccagaagtcaccatggcctctcccaga
gacctggtgacctcagaggtgacagcccggagtttccgggtgtcatggacccacgcccca
gggacggtggagaagtatcgggtggtgtactaccctgccagcgggggccagcccgaggag
aagatggtgcagggcacagtggacacggtggtgcttaactacctcctctccctgactgag
taccagatggccgtgttcgccatctacgccagttcagctagcgaggccctccgaggcagt
gccaccacattggccctgcccatggtgaacaacctggagctgtttgacatcacccacaac
accatgagggcccgctggagggtcgcagagggggcttctggctacatgatcctctatgcc
ccactgaccgagggaaacgacgccgatgagaaggaggtgaaagtggctgagaccgtgaac
gaagtggaactggagaacctgaccccagacacagagtacacagtgaccgtgtacgctatg
tacggagaggaggccagtgaccctatgaccagtcaggagaccacgctacccctgaccccg
gcggggaacctgcgcttctccaacgtcgaccacagctcggccagactcacctgggaggcg
acgtccaagaaggccaacggttaccgcatcatgtacgtcaagaccaatggagtgcagacc
aatgagatggacgttggccgcatcaccaccctgttgctaaggaacctgacgtcattgacc
gagtacacggtggccatctttgctatctatgacgagggccaggcagagcccttgactgac
agcttcaccactaagacggtcccagagcctctgaacctgaggagcagtgaagtctccaca
gagagcttcagggtcacctgggaacactcagcccacgacgtggtcctttacagactcaca
tggacccccatcagaggaggagacactaaagagatgctagtgaacggtaaaatgaatagc
cacctgctgactggactgaggcccatcactgagtacgaggtctctctgattgctgtcttc
agaaacgaggaagaaagcaacgccgtgaccctcacagagtcaacagttgcaagaacaacg
actaccacaaaagctactactaccacaactaccacacaagctaccaccaaagcagttgtg
cgtctgggtgtgaggaacctcctgctcagcgatcacaccaccttcagcatggaggtgtcc
tgggagctgcaggaccgcaacgtgcgtcagtaccgcgtcgcctatgtcaccgccaggggc
gatcgtgccgaggagacgaaaatggtcccaggtggtcagaacagcctcctgctgcagcca
ctgctgtctgacatggagtacaaggtgacggtcaccccggtctatgccgacggagacggc
cccggtgtcagccgcatgggacgcaccttgccactgtctgctcctaggaacctgagagtg
tcggaggaatggtacaaccgcttccgtatcacctgggacacgcccccatcccccactatg
ggctatagggtcgtctacaaccccatctctgctccgggacctgctttggagacctttgtg
ggcgaggacgtgaacaccatgctgatcctgaacctgatgagcggtactgagtacggcgtt
agggtcatcgcctcctacactaccggctccagcgagaccctcaccggcaaggccaggaca
ttgtaccttggagtgaccaatctgaacacctaccaggtgaggatgaccagcgtgtgtgcc
cagtggggtgcccaccgccatgccactctgtaccgtgtggtcatcgagtcgctgctcaat
ggatataagcaggaggcaaggctgggaggaggaaccacccggcactgcttcaatgacctg
acagctaacacgcagtacaagatcagtgtgtacgcccaactccaggacacagagggacct
gcagtctccaccacagagaagaccttccctgttcccaccccggcacccaccagaccaccc
actacgaccgctcctcccagtataccctcagtcaaggaagtttgcaaggcggccaaggca
gacctggcattcctagtggacggctcctggagcatcggggatgacaacttcctgaaaatc
atccgcttcctgtacagcaccacaggagccctcgacatcattggaccagatggtactcag
gttgccattgtccagttcagtgacgatgccagaaccgagttcaaacttaactcgtacgac
aacaaggagaggctgctagaggccattaaccgcatctcctataagggagggaacaccaag
acagggctagccatccggcatgtgaaagacaccatcttcacagtgggaggtggtatccgg
aggggcatccccaaagtgctggtggtgttgactgacgggcgctctcaggacgatgtcaac
aaggtctccaaagagatgcagatggaagggtacattgtttttgccattggttttgcggat
gcggactacggggagctggtgagcatcgccagcaagcctagcgggagacacgttttcttt
gtggatgatttagacgccttcaagaaaattgaggaaaagctggtcacttttgtttgtgag
gctgccactgccacttgtccttcagtggcgatgagtggcagtaccttgccaggtttcagg
atgatggagatgtttggcctggtggagggtatgcatggacatgtatcaggagtgtccatg
gagcctggcaccttcaacagcttcccctgcttccgcctgcacaacaactccctccttgcc
cagcccaccaagtttatccaccccgagggtttgccctccgattacaccatcactatgctg
ttccgcctgctgcctgaaacgcccaaggagccctttgcattgtgggagatcctcaacaag
gacaacgagcccctggtgggcctcattctggacaacggtggcaagaccctcaccttcttc
aaccatgactacaaaggacagtttcagactgtgaccttcgagggacctgagatcaagaag
ctcttctacggcagtttccacaagctacacatggctattagcaagaccagcgccaaggct
gtcattgactgtaagctagtaggggagaaggccatcaacgcggcgggcaacatcaccacg
gatggcctggaggtgctgggacgcatggtgcgctccagggggaagaaggacagctctgca
ccgtttcaactgcagtcgtttgacatcgtctgcagcacgtcctgggccagccgagacaag
tgctgtgagcttcctggtttgaggaaggaggaggactgtcctgccatgccccgtgcctgc
acctgcagccaggaaagcaaaggtccccctggccccactggaccccctggaggacctggg
atcagaggagggagaggggaccgtggagaaccaggagctgtgggaccgataggtccagtt
ggggacgctggtactcctgggctgcaggggcctcctggaccccaggggcccagtggacgt
accatcatgggccctccgggtggtccaggagaaagaggtgagaagggtgcagctggcact
ccaggaatacagggcattcctgggtctcctgggtcaccaggtcgagcgggacaaacagga
acaaggggacttcctggtaaagatggaccccaggggcgaacaggacctccagggactata
ggcactccaggagctcctgggtcaccagggtcaagtggacctccagggtcactgggaaac
cagggacctcctggtcctgccggaaacaaaggagagaagggagaaagaggtgacctgcaa
tcccaggcatcggtccaagcaatcgcccggcaggtctgtgagcagctgatacagagtcac
atggctcgctacagctccatccttaaccacatccccagcgcacccgtctctgtccgcacc
gttccaggtcccccaggagagcccgggcggcagggcggcccaggaccacagggagagcag
gggcccccgggcagaccagggttccccgggtccaacggagaaaatggacaaccaggagcc
agaggtttgtcaggagagaagggtgacaagggaagcccaggcacaggagtccagggtccc
agaggccctgtcggacccccaggaccaacgggtcagggccggacaggtagccagggtcca
tctggtcggccggggaaccctggaacacctgggcggccgggtatccctggaccagtgggg
tcggctggacctcctggatactgtgaccagaactcctgtgtgggctacaacgtaggagag
ggtggcatcggtggtgacacttctgaccgccacaatcttcccttagtccaattgcccccc
aacacctaccagaactatgacgaggtggaggaggaggacccctataggtatggcgagggg
ggctacccctccgagtactatcagcccaactacccggcgcctcgaccggtcgtgcccgag
gacccagccctcacccagggcgacgaagtgctgaggtcccccgggatccaccgctcctac
aggagcctggctgacaagaatgataagaaagaagaagaggggccgggggagaggaagatg
gtcgtcccatga
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