Salvelinus fontinalis (brook trout): 129831292
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Entry
129831292 CDS
T11136
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129831292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129831292
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129831292
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129831292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
129831292
NCBI-ProteinID:
XP_055750525
LinkDB
All DBs
Position
32:complement(38764607..38783215)
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AA seq
950 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKCFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVATSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPPSPAAYTTENSED
DKKRGRSTDSEVGQLCCTRSGFEVMPFITFQSPVKNGNPSSSLSSSSSSSSSSSSSASSG
ASSSSLATIAGGCLPVTGGNSLLGNMGGLLSNSGSYRDATQQQQLQQHYQTQARNSVISS
NTPSNSNPSNNILLPSPSASSPANSSTTLPPLTPNTQLHAPSRPSPSSSLGLGLGLGLGK
GGIIGSPAVSQMSGLGLSGMPASLNTMAGLLAGSTSAPYATAAAGSGTIGSPLAGKSGCS
SSPNSSTVGPVGGNTVGDRSTGLLGSAPGAIGVSGGILSLSGLGSGQLAVQGLPLVAPSP
IGGMSPGSSLGAIGSIGGNSGSGSSSSVGMGGGSSSITRPPSGQKQNGSTSYSAVVADST
PDSALNSASQLQSSQPSSLTSTTNQPKDSGPSLLGPMTLPTSSPSPSYSESKLPGSGMLN
GPLSYTQTSESKPQEPLSTLKSMAERAALGSGMEGEMLPLHLTTDIFPSTTLPPGPPSAP
QQPSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPC
PTLPFHHQVPPPHSDSVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYM
MWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagtaacagaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaacgctaaccag
aaggagaagtatgaagccgacctcaagaaagagattaaaaaactacagcgtcttcgagac
cagatcaagacgtgggtggcctccaacgagattaaagacaaaaggcagctagtggagaat
cgcaaactgattgagacgcaaatggagcggttcaagatcgtggagcgagagaccaagacg
aaggcgtactcgaaagaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaagaggaggtcggcaattggctaacgaatacaatagacactctgaacatgcaggtggac
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaagggcgacaaa
gagaaacaggaccgcatcgaagagctgaagtgcttcatcgagaagcaccggtaccacatc
cggatgctggagaccatcctgcgcatgctggacaacgacaccttgccggtggactccatc
cgcaagatcaaggacgacgtggagtactacatggactcgtcgcaggaccccgacttcgag
gagaacgagttcctctacgacgacctggatctggaggagctccctacctctccgtctgtc
tccccccatccatctcttgtctctctagccgggtcgctggtggccacgtccccgccgggc
caatcgctcctggacgacgatctcttccatcagatctccagcggcacgcctacctccacc
acttcctcctcgcccatccctccctcgcccgcagcttacactacggagaactctgaagat
gacaagaaaaggggacgttcgacagacagtgaagtcggtcagctgtgctgcaccaggagt
ggttttgaagtaatgccttttataacatttcagtcgcctgtcaagaacggcaacccctct
tcgtcgttgtcctcctcctcctcttcatcctcctcctcttcatcctctgcctcctcggga
gcctcctcatcctcgctggcgaccatcgccgggggttgcctgcctgtcactgggggcaac
agcctcctgggcaacatggggggtctcctctccaactctggcagctacagagacgctacc
cagcaacagcagctgcagcagcattaccaaacccaggccagaaactcagtcatctcctcc
aacacaccctccaactccaacccgtcgaacaacatcctcctccccagcccctccgcttcc
tcacccgccaactctagcacgaccctccccccactcacgcccaacacccagttgcatgct
ccgtcaaggccttcaccgtcctccagcttggggctcgggttgggcttgggccttggtaaa
ggcggcattatagggtcaccggccgtcagccagatgtcgggccttggcttgtcggggatg
ccggcatccctaaacaccatggccgggctcctggcgggctcaacttcggccccctacgcc
acggcagcagcaggctccggaaccatcggaagccccctagcagggaaaagcggctgcagt
agcagccctaactccagcacagtgggaccggtgggcgggaacactgtcggcgacagatcc
acgggcctgttgggctctgcgcccggtgcaattggtgtcagcggtgggatcctcagccta
agcggccttggctcagggcagttggcggtccagggccttcccctggtggcccccagtccc
ataggaggcatgtcccctggaagcagcctgggagccataggaagcattggagggaactct
ggttcaggttcaagcagtagcgtgggcatgggaggaggaagctcgtcaatcacaaggcca
cccagtggacagaagcagaatggtagcactagttatagtgctgtagtagcagacagcaca
cctgattccgccctcaacagtgccagccaattacaaagcagccagccctcgtctttgacc
tccaccaccaatcagcctaaagacagtggccccagcctcttagggcccatgactcttccc
accagctctccctcgccctcctacagcgagagtaaacttccaggcagcggtatgctcaac
gggccactctcctacacacagacctctgaaagcaagccccaggagcctctgagcactcta
aagtctatggcagaacgagcggcactgggctcaggaatggagggagagatgctccctctg
cacctcaccacagacattttccccagcactacattgcccccggggcctccctcggctccc
cagcagccctcgctttcagaggtcagcatccccccatcgctgggcgtgtgcccactcggg
cctgtgcccctgtccaaagaccagctgtaccagcaggccatgcaggaatcggcatggacg
cacatgcctcacccctccgactcggagaggatcaggcagtacctgatgaggaacccatgt
cccaccctgcctttccaccaccaggtgccacccccccactccgactctgtagagttctac
cagagactgtccacagagacactgttcttcatcttctactacctagagggcactaaggcc
cagtatctggcagccaaggccttgaagaagcagtcgtggcggttccacaccaagtacatg
atgtggttccagaggcacgaggagcccaagaccatcacagatgagtttgagcaggggacg
tacatttactttgactacgagaagtggggacaacggaagaaggagggattcacgtttgag
tacaggtaccttgaggaccgagacctccagtga
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